Factsheet for Os12t0208900-00

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0635550-00
Os02t0706600-00
Os05t0579300-01
Os08t0438400-01
Os08t0479400-01
Os09t0414600-02
Os09t0466400-01
Os11t0243300-01
Os12t0208900-00

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G14440.1	Os11t0243300-01	AT1G14440.1	16428600
AT1G14440.1	Os12t0208900-00	AT1G14440.1	16428600
AT1G14440.1	Os01t0635550-00	AT1G75240.1	16428600
AT1G14440.1	Os02t0706600-00	AT1G75240.1	16428600
AT1G14440.1	Os05t0579300-01	AT1G75240.1	16428600
AT1G14440.1	Os01t0635550-00	AT2G18350.1	16428600
AT1G14440.1	Os02t0706600-00	AT2G18350.1	16428600
AT1G14440.1	Os05t0579300-01	AT2G18350.1	16428600
AT1G14440.1	Os01t0635550-00	AT3G50890.1	16428600
AT1G14440.1	Os02t0706600-00	AT3G50890.1	16428600
AT1G14440.1	Os05t0579300-01	AT3G50890.1	16428600
AT1G14440.1	Os08t0438400-01	AT5G15210.1	16428600
AT1G14440.1	Os09t0414600-02	AT5G15210.1	16428600
AT1G14440.1	Os08t0479400-01	AT5G65410.1	16428600
AT1G14440.1	Os09t0466400-01	AT5G65410.1	16428600

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG23238	Sorghum	nucleus	55.41	37.5
Zm00001d041780_P001	Maize	nucleus	58.11	36.96
GSMUA_Achr6P28870_001	Banana	nucleus	31.98	31.42
GSMUA_Achr3P16680_001	Banana	nucleus	32.43	30.9
GSMUA_Achr9P08090_001	Banana	nucleus	33.33	30.71
GSMUA_Achr1P13300_001	Banana	nucleus	31.08	30.53
GSMUA_Achr10P...	Banana	nucleus	31.98	29.34
GSMUA_Achr6P17420_001	Banana	nucleus	27.03	28.99
VIT_07s0130g00240.t01	Wine grape	nucleus	25.68	28.79
KRG92484	Soybean	nucleus	22.52	26.32
Os11t0243300-01	Rice	cytosol, mitochondrion, nucleus, plastid	48.2	25.66
Solyc01g102980.2.1	Tomato	nucleus	31.08	23.79
Os09t0466400-01	Rice	nucleus	29.28	23.3
PGSC0003DMT400053397	Potato	nucleus	29.73	23.0
Os04t0434500-00	Rice	nucleus	29.28	22.89
Os08t0479400-01	Rice	nucleus	28.83	22.07
Os05t0579300-01	Rice	nucleus	24.32	21.18
Os01t0635550-00	Rice	nucleus	21.62	20.69
CDY53549	Canola	nucleus	28.83	20.38
Bra026830.1-P	Field mustard	nucleus	28.83	20.38
CDX81638	Canola	nucleus	28.83	20.32
Os03t0718500-00	Rice	mitochondrion, nucleus, peroxisome	21.17	19.75
Bra026219.1-P	Field mustard	nucleus	27.48	19.68
CDY45257	Canola	nucleus	27.48	19.61
AT1G14440.1	Thale cress	nucleus	27.48	19.55
CDY09363	Canola	nucleus	26.13	19.46
CDY41692	Canola	nucleus	26.13	19.33
Bra026589.1-P	Field mustard	nucleus	26.13	19.33
CDY39311	Canola	nucleus	26.13	18.95
AT2G02540.2	Thale cress	nucleus	26.13	18.71
Os02t0706600-00	Rice	nucleus	27.93	14.52
Os08t0438400-01	Rice	plastid	21.62	14.2
Os09t0414600-02	Rice	nucleus	2.7	5.5
Os11t0128300-01	Rice	cytosol, plastid	1.8	3.81
Os12t0124500-01	Rice	cytosol, plastid	1.8	3.81
Os08t0438100-01	Rice	cytosol	0.9	2.15

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.13	UniProt:A0A0P0Y878	ProteinID:BAT16304.1	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0046872	InterPro:Homeobox-like_sf	InterPro:Homeodomain_ZF_HD	EnsemblPlantsGene:Os12g0208900	EnsemblPlants:Os12t0208900-00
PANTHER:PTHR31948	PANTHER:PTHR31948:SF42	SUPFAM:SSF46689	TIGRFAMs:TIGR01565	UniParc:UPI000393928B	SEG:seg

Description

zinc finger homeodomain class homeobox transcription factor 3Similar to ZF-HD protein dimerisation region containing protein, expressed. (Os12t0208900-00)

Coordinates

chr12:+:5674410..5676438

Molecular Weight (calculated)

24160.1 Da

IEP (calculated)

10.065

GRAVY (calculated)

-0.422

Length

222 amino acids

Sequence
(BLAST)

001: MDLSGAQGEL PLPMHAAASP YLGLHHDHHH QLLGVGAHPR GHGHHHHHLL VAALPPPTRM VMPLSAMHTS ESDDAAARPG GGAAARKRFR TKFTAEQKAR
101: MLGFAEEVGW RLQKLEDAVV QRFCQEVGVK RRVLKVWMHN NKHTLARRHL HPSPAAAAGD DDDDGAPPPH PDPRRRELAA AAAPPPAPVT QHIKKSVDNK
201: SLISSLAALH CIALLLFHQI DA

Best Arabidopsis Sequence Match ( AT2G02540.1 )
(BLAST)

001: MEIASQEDPI PINTSYGNSG GGHGNMNHHH HANSAPSSLN ITTSNPLLVS SNSNGLGKNH DHSHHHHVGY NIMVTNIKKE KPVVIKYKEC LKNHAATMGG
101: NAIDGCGEFM PSGEEGSIEA LTCSVCNCHR NFHRRETEGE EKTFFSPYLN HHQPPPQQRK LMFHHKMIKS PLPQQMIMPI GVTTAGSNSE SEDLMEEEGG
201: GSLTFRQPPP PPSPYSYGHN QKKRFRTKFT QEQKEKMISF AERVGWKIQR QEESVVQQLC QEIGIRRRVL KVWMHNNKQN LSKKSNNVSN NVDLSAGNND
301: ITENLASTNP

Arabidopsis Description

ZHD3Zinc-finger homeodomain protein 3 [Source:UniProtKB/Swiss-Prot;Acc:O64722]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.