Factsheet for Solyc01g102980.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g102980.2.1
Solyc02g067310.2.1
Solyc02g067320.1.1
Solyc04g014260.1.1
Solyc04g080490.2.1
Solyc05g007580.1.1
Solyc05g051420.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G14440.1	Solyc01g102980.2.1	AT1G14440.1	16428600
AT1G14440.1	Solyc04g080490.2.1	AT1G75240.1	16428600
AT1G14440.1	Solyc04g080490.2.1	AT2G18350.1	16428600
AT1G14440.1	Solyc02g067310.2.1	AT3G28920.1	16428600
AT1G14440.1	Solyc02g067320.1.1	AT3G28920.1	16428600
AT1G14440.1	Solyc04g080490.2.1	AT3G50890.1	16428600
AT1G14440.1	Solyc05g007580.1.1	AT5G15210.1	16428600
AT1G14440.1	Solyc02g067310.2.1	AT5G39760.1	16428600
AT1G14440.1	Solyc02g067320.1.1	AT5G39760.1	16428600
AT1G14440.1	Solyc04g014260.1.1	AT5G65410.1	16428600
AT1G14440.1	Solyc05g051420.1.1	AT5G65410.1	16428600

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400053397	Potato	nucleus	94.14	95.12
VIT_12s0035g01880.t01	Wine grape	nucleus	66.9	69.04
KRH51275	Soybean	nucleus	60.34	61.84
KRH01880	Soybean	nucleus	57.59	58.39
GSMUA_Achr6P28870_001	Banana	nucleus	44.14	56.64
GSMUA_Achr1P13300_001	Banana	nucleus	43.45	55.75
GSMUA_Achr6P17420_001	Banana	nucleus	38.97	54.59
GSMUA_Achr10P...	Banana	nucleus	45.17	54.13
GSMUA_Achr9P08090_001	Banana	nucleus	44.48	53.53
GSMUA_Achr3P16680_001	Banana	nucleus	42.41	52.79
Solyc04g074990.2.1	Tomato	nucleus	25.86	52.45
Solyc05g051420.1.1	Tomato	nucleus	30.0	52.1
Solyc03g061620.1.1	Tomato	cytosol	14.83	48.86
Solyc02g067330.1.1	Tomato	cytosol, nucleus, plastid	16.55	47.06
Solyc03g116070.1.1	Tomato	mitochondrion	12.76	44.58
Solyc02g087970.1.1	Tomato	mitochondrion	13.45	43.33
AT1G14440.1	Thale cress	nucleus	44.83	41.67
Bra026219.1-P	Field mustard	nucleus	44.14	41.29
CDY09363	Canola	nucleus	42.41	41.28
CDY41692	Canola	nucleus	42.41	41.0
Bra026589.1-P	Field mustard	nucleus	42.41	41.0
AT2G02540.2	Thale cress	nucleus	43.79	40.97
CDY45257	Canola	nucleus	43.79	40.84
CDX81638	Canola	nucleus	44.14	40.63
Bra026830.1-P	Field mustard	nucleus	43.79	40.45
CDY53549	Canola	nucleus	43.79	40.45
CDY39311	Canola	nucleus	41.38	39.22
Solyc04g014260.1.1	Tomato	nucleus	32.41	38.06
Solyc03g098060.1.1	Tomato	nucleus	23.45	37.99
Solyc04g080490.2.1	Tomato	nucleus	35.17	35.17
KXG23238	Sorghum	nucleus	37.93	33.54
Solyc05g018740.1.1	Tomato	cytosol	13.45	32.77
Solyc01g103820.1.1	Tomato	cytosol	10.34	31.91
Solyc02g067310.2.1	Tomato	nucleus	31.38	31.16
Os12t0208900-00	Rice	nucleus	23.79	31.08
Solyc02g085160.1.1	Tomato	nucleus	31.38	31.06
Solyc01g103810.1.1	Tomato	cytosol	12.41	31.03
Zm00001d041780_P001	Maize	nucleus	37.24	30.95
TraesCS4D01G086300.1	Wheat	nucleus	41.03	30.59
Solyc05g020000.1.1	Tomato	cytosol	12.41	30.25
TraesCS4B01G089700.1	Wheat	nucleus	41.38	30.23
TraesCS4A01G226800.1	Wheat	nucleus	41.38	29.93
KXG28111	Sorghum	nucleus	40.34	29.7
Solyc05g007580.1.1	Tomato	nucleus	30.34	29.63
Zm00001d049000_P001	Maize	plastid	41.03	28.33
HORVU4Hr1G015250.6	Barley	nucleus, plastid	40.69	28.1
Os11t0243300-01	Rice	cytosol, mitochondrion, nucleus, plastid	40.34	28.06
Solyc02g067320.1.1	Tomato	nucleus	31.03	27.19
Solyc09g089550.2.1	Tomato	nucleus	26.21	9.44

Protein Annotations

EnsemblPlants:Solyc01g102980.2.1	EnsemblPlantsGene:Solyc01g102980.2	Gene3D:1.10.10.60	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:Homeodomain_ZF_HD	InterPro:IPR006456	InterPro:ZF_HD_homeobox_Cys/His_dimer	PANTHER:PTHR31948
PANTHER:PTHR31948:SF19	PFAM:PD125774	PFAM:PF04770	PFscan:PS51523	SEG:seg	SUPFAM:SSF46689
TIGRFAMs:TIGR01565	TIGRFAMs:TIGR01566	UniParc:UPI0002768038	UniProt:K4B1M4	MapMan:15.5.3.13	:

Description

No Description!

Coordinates

chr1:+:91639500..91641389

Molecular Weight (calculated)

32602.9 Da

IEP (calculated)

7.925

GRAVY (calculated)

-0.759

Length

290 amino acids

Sequence
(BLAST)

001: MELPSQDHED MPIPINSTYG HLIHHDPTPP NNTNHIIPPS MNGPPIDAPP VATAADHHVP FKKIVRYKEC LKNHAASMGG NATDGCGEFM PSGEEGTIEA
101: LICSACNCHR NFHRKEVEGD QQQLASSCDC FHHVNNRVLG GGSTKKVYLG HNHHKTSLGP EPFGTIIPTR PPHHQMIMSY NMGSLPNSES EEHDIQDHHH
201: IGGIMGMARP LHHVKKRFRT KFTQEQKDKM LNFAEKVGWK IQKQEEGVVQ QFCQEVGVKR RVLKVWMHNN KHSLAKKNIT TNIPNENQLP

Best Arabidopsis Sequence Match ( AT1G14440.2 )
(BLAST)

001: MEIASQEDHD MPIPLNTTFG GGGSHGHMIH HHDHHAANSA PPTHNNNNTT QPPPMPLHGN GHGNNYDHHH HQDPHHVGYN AIIKKPMIKY KECLKNHAAA
101: MGGNATDGCG EFMPSGEDGS IEALTCSACN CHRNFHRKEV EGELAATAMS PYHQHPPHRK LMLNHQKIRS AMPHQMIMPI GVSNYRYMHN NSESEDFMEE
201: DGVTTASRSL PNLPYNQKKR FRTKFTPEQK EKMLSFAEKV GWKIQRQEDC VVQRFCEEIG VKRRVLKVWM HNNKIHFSKK NNINLEDNDN EKINNLNNVD
301: LSGNNDMTKI VP

Arabidopsis Description

ZHD4Zinc-finger homeodomain protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9M9S0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.