Factsheet for VIT_12s0035g01880.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_00s0199g00250.t01
VIT_01s0026g02460.t01
VIT_12s0035g01880.t01
VIT_14s0108g00750.t01
VIT_18s0001g12580.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G14440.1	VIT_12s0035g01880.t01	AT1G14440.1	16428600
AT1G14440.1	VIT_18s0001g12580.t01	AT1G75240.1	16428600
AT1G14440.1	VIT_18s0001g12580.t01	AT2G18350.1	16428600
AT1G14440.1	VIT_14s0108g00750.t01	AT3G28920.1	16428600
AT1G14440.1	VIT_18s0001g12580.t01	AT3G50890.1	16428600
AT1G14440.1	VIT_01s0026g02460.t01	AT5G15210.1	16428600
AT1G14440.1	VIT_14s0108g00750.t01	AT5G39760.1	16428600
AT1G14440.1	VIT_00s0199g00250.t01	AT5G65410.1	16428600

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH51275	Soybean	nucleus	75.44	74.91
KRH01880	Soybean	nucleus	71.89	70.63
PGSC0003DMT400053397	Potato	nucleus	68.68	67.25
Solyc01g102980.2.1	Tomato	nucleus	69.04	66.9
VIT_17s0000g06200.t01	Wine grape	cytosol	10.68	61.22
GSMUA_Achr6P28870_001	Banana	nucleus	48.75	60.62
GSMUA_Achr1P13300_001	Banana	nucleus	48.4	60.18
GSMUA_Achr10P...	Banana	nucleus	49.82	57.85
GSMUA_Achr6P17420_001	Banana	nucleus	42.35	57.49
GSMUA_Achr9P08090_001	Banana	nucleus	48.75	56.85
GSMUA_Achr3P16680_001	Banana	nucleus	45.55	54.94
VIT_18s0001g07140.t01	Wine grape	nucleus	40.57	49.57
VIT_14s0108g00760.t01	Wine grape	mitochondrion	16.01	47.37
VIT_01s0026g02450.t01	Wine grape	cytosol	14.23	47.06
VIT_00s0199g00250.t01	Wine grape	nucleus	40.57	46.72
VIT_07s0130g00240.t01	Wine grape	nucleus	32.74	46.46
AT1G14440.1	Thale cress	nucleus	50.53	45.51
CDX81638	Canola	nucleus	50.53	45.08
CDY53549	Canola	nucleus	50.18	44.9
Bra026830.1-P	Field mustard	nucleus	50.18	44.9
CDY45257	Canola	nucleus	49.11	44.37
AT2G02540.2	Thale cress	nucleus	48.75	44.19
Bra026219.1-P	Field mustard	nucleus	48.75	44.19
CDY09363	Canola	nucleus	46.62	43.96
VIT_17s0000g00810.t01	Wine grape	nucleus	24.2	43.87
CDY41692	Canola	nucleus	46.62	43.67
CDY39311	Canola	nucleus	47.33	43.46
Bra026589.1-P	Field mustard	nucleus	46.26	43.33
VIT_14s0108g00810.t01	Wine grape	cytosol	16.37	35.66
VIT_18s0001g12580.t01	Wine grape	nucleus	39.5	35.13
VIT_18s0117g00270.t01	Wine grape	nucleus	33.1	34.19
VIT_08s0056g01130.t01	Wine grape	nucleus	15.3	31.85
VIT_01s0026g02460.t01	Wine grape	nucleus	24.91	30.43
VIT_10s0042g00210.t01	Wine grape	nucleus	18.51	25.87
VIT_14s0108g00750.t01	Wine grape	nucleus	32.38	25.63
VIT_04s0023g01880.t01	Wine grape	nucleus	37.37	24.25

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100247287	wikigene:100247287	MapMan:15.5.3.13	ProteinID:CCB54999	ProteinID:CCB54999.1
UniProt:F6HJZ6	EMBL:FN595990	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
InterPro:Homeobox-like_sf	InterPro:Homeodomain_ZF_HD	InterPro:IPR006456	EntrezGene:LOC100247287	wikigene:LOC100247287	PFAM:PD125774
PFAM:PF04770	PFscan:PS51523	PANTHER:PTHR31948	PANTHER:PTHR31948:SF19	SUPFAM:SSF46689	TIGRFAMs:TIGR01565
TIGRFAMs:TIGR01566	UniParc:UPI00015CB432	ArrayExpress:VIT_12s0035g01880	EnsemblPlantsGene:VIT_12s0035g01880	EnsemblPlants:VIT_12s0035g01880.t01	unigene:Vvi.19863
RefSeq:XP_003633412	RefSeq:XP_003633412.1	InterPro:ZF_HD_homeobox_Cys/His_dimer	SEG:seg	:	:

Description

No Description!

Coordinates

chr12:-:22174979..22176293

Molecular Weight (calculated)

30910.8 Da

IEP (calculated)

8.088

GRAVY (calculated)

-0.739

Length

281 amino acids

Sequence
(BLAST)

001: MELTSQEGEI PIPINSAYGG GGGHGHGHGH GHMIHHDPAP HNHIIHSSAP QIPSNGPPIP STLEDHVPYK KAVRYRECLK NHAAAMGGNA TDGCGEFMPG
101: GEEGTLEALN CSACHCHRNF HRKEVEGERS SCDCFHSPHL NRVGRKVILG HHKNIIGPEA LGYPTGTLIS SRPPPPHQMI MSYNMGSLPS ESDEQEDGGG
201: GVVARPPQLV KKRFRTKFSQ EQKEKMLSFA EKVGWKIQKQ EEAVVQQFCQ EIGVKRRVLK VWMHNNKHNL AKKTPLPSSD D

Best Arabidopsis Sequence Match ( AT2G02540.1 )
(BLAST)

001: MEIASQEDPI PINTSYGNSG GGHGNMNHHH HANSAPSSLN ITTSNPLLVS SNSNGLGKNH DHSHHHHVGY NIMVTNIKKE KPVVIKYKEC LKNHAATMGG
101: NAIDGCGEFM PSGEEGSIEA LTCSVCNCHR NFHRRETEGE EKTFFSPYLN HHQPPPQQRK LMFHHKMIKS PLPQQMIMPI GVTTAGSNSE SEDLMEEEGG
201: GSLTFRQPPP PPSPYSYGHN QKKRFRTKFT QEQKEKMISF AERVGWKIQR QEESVVQQLC QEIGIRRRVL KVWMHNNKQN LSKKSNNVSN NVDLSAGNND
301: ITENLASTNP

Arabidopsis Description

ZHD3Zinc-finger homeodomain protein 3 [Source:UniProtKB/Swiss-Prot;Acc:O64722]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.