Factsheet for VIT_04s0023g01880.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_17s0000g06200.t01	Wine grape	cytosol	7.16	63.27
VIT_01s0026g02450.t01	Wine grape	cytosol	9.47	48.24
VIT_17s0000g00810.t01	Wine grape	nucleus	15.94	44.52
VIT_18s0001g07140.t01	Wine grape	nucleus	23.09	43.48
VIT_14s0108g00760.t01	Wine grape	mitochondrion	9.47	43.16
VIT_00s0199g00250.t01	Wine grape	nucleus	23.09	40.98
VIT_12s0035g01880.t01	Wine grape	nucleus	24.25	37.37
KRH76785	Soybean	nucleus	27.25	37.22
KRH08258	Soybean	nucleus	27.94	36.78
VIT_18s0001g12580.t01	Wine grape	nucleus	26.79	36.71
KRH28682	Soybean	nucleus	28.41	36.61
KRH69909	Soybean	nucleus	27.94	36.23
TraesCS3B01G258400.1	Wheat	nucleus	18.24	34.05
Zm00001d009674_P001	Maize	nucleus	18.71	33.89
Solyc02g085160.1.1	Tomato	nucleus	22.86	33.79
TraesCS1A01G418600.1	Wheat	nucleus	17.55	33.78
Os05t0579300-01	Rice	nucleus	19.86	33.73
Os01t0635550-00	Rice	nucleus	18.01	33.62
HORVU1Hr1G091470.1	Barley	nucleus	18.01	33.19
TraesCS3D01G224100.1	Wheat	nucleus	17.78	32.63
VIT_14s0108g00810.t01	Wine grape	cytosol	9.7	32.56
PGSC0003DMT400009033	Potato	nucleus	22.63	32.45
TraesCS3A01G226100.1	Wheat	nucleus	17.55	32.34
VIT_18s0117g00270.t01	Wine grape	nucleus	19.86	31.62
VIT_07s0130g00240.t01	Wine grape	nucleus	14.32	31.31
TraesCS1D01G426300.1	Wheat	nucleus	18.01	31.2
GSMUA_Achr3P31090_001	Banana	nucleus	20.32	31.1
TraesCS1B01G448600.1	Wheat	nucleus	18.01	30.95
GSMUA_Achr10P...	Banana	nucleus	18.94	30.94
VIT_08s0056g01130.t01	Wine grape	nucleus	9.24	29.63
GSMUA_Achr2P23010_001	Banana	nucleus	19.86	29.55
GSMUA_Achr4P14910_001	Banana	nucleus	21.02	27.58
GSMUA_Achr8P27010_001	Banana	nucleus	20.32	27.41
VIT_01s0026g02460.t01	Wine grape	nucleus	14.55	27.39
GSMUA_Achr4P07850_001	Banana	nucleus	20.55	26.89
GSMUA_Achr7P25600_001	Banana	nucleus	21.25	26.51
VIT_10s0042g00210.t01	Wine grape	nucleus	12.01	25.87
VIT_14s0108g00750.t01	Wine grape	nucleus	20.79	25.35
GSMUA_Achr6P27240_001	Banana	plastid	21.94	24.74
GSMUA_Achr6P22120_001	Banana	nucleus	22.17	24.12
GSMUA_Achr6P24230_001	Banana	nucleus	12.24	23.77
OQU78488	Sorghum	plastid	19.63	22.79
GSMUA_Achr3P19060_001	Banana	nucleus	12.24	22.08
KXG30914	Sorghum	nucleus	19.17	20.44
Zm00001d017784_P001	Maize	nucleus	19.4	20.14
Os02t0706600-00	Rice	nucleus	19.86	20.14
TraesCS6B01G301000.1	Wheat	nucleus	19.86	18.66
TraesCS6D01G253700.1	Wheat	nucleus	19.86	18.49
TraesCS6A01G273700.1	Wheat	nucleus	19.86	18.49
Zm00001d051573_P001	Maize	nucleus	18.94	18.39
HORVU6Hr1G069090.1	Barley	nucleus	18.94	17.79
HORVU6Hr1G069070.1	Barley	plastid	7.85	12.1

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.13	EMBL:AM479791	ProteinID:CAN72985	ProteinID:CAN72985.1	ProteinID:CCB44444
ProteinID:CCB44444.1	UniProt:F6GWV8	EMBL:FN594959	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	InterPro:Homeobox-like_sf
InterPro:Homeobox_dom	InterPro:Homeodomain_ZF_HD	InterPro:IPR001356	InterPro:IPR006456	PFAM:PD125774	PFAM:PF04770
PFscan:PS50071	PFscan:PS51523	PANTHER:PTHR31948	PANTHER:PTHR31948:SF9	SUPFAM:SSF46689	TIGRFAMs:TIGR01565
TIGRFAMs:TIGR01566	UniParc:UPI0002109A17	ArrayExpress:VIT_04s0023g01880	EnsemblPlantsGene:VIT_04s0023g01880	EnsemblPlants:VIT_04s0023g01880.t01	InterPro:ZF_HD_homeobox_Cys/His_dimer
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr4:+:18450985..18454288

Molecular Weight (calculated)

48590.7 Da

IEP (calculated)

7.693

GRAVY (calculated)

-0.560

Length

433 amino acids

Sequence
(BLAST)

001: MAEQQAAEIR GRKIMRDIQG VYHRHLHHHQ FNLQQQTQHG EVGDPDPDPD PVSATIAVSG ATATPITGGS NPKVAAAPPH PPPQSAASIR YRECLKNHAA
101: SMGGHVFDGC GEFMPSGEEG TLEALKCAAC DCHRNFHRKE IDGESQPTAN CYYTCNPNTN SSRRNTIAPQ LPPSHAPLPH LHQHHKYSHG LSGSPLMSPI
201: PPMMMAFGGG GGAPAESSSE DLNMFQSNVG MHLQPQPAFA LSKKRFRTKF SQEQKDKMQE FAEKLGWKIQ KQEEQEVQQF CSDVGVKRQV FKVWMHNNKQ
301: AMKKKQLKTL ATSTCIIFLL ETYWDLTLSS FHITSSKSSS PERERERKEE TNDKNCTYFP LCLVVMDSWE VSLTYESLFT NLLYYYCTII SCINPICPFN
401: RQFFGSLKPY HILLSFSTVE VKQLDCSCQH TGI

Best Arabidopsis Sequence Match ( AT2G18350.1 )
(BLAST)

001: MEVREKKDEK MEMTRRKSSA LDHHRLPPYT YSQTANKEKP TTKRNGSDPD PDPDLDTNPI SISHAPRSYA RPQTTSPGKA RYRECQKNHA ASSGGHVVDG
101: CGEFMSSGEE GTVESLLCAA CDCHRSFHRK EIDGLFVVNF NSFGHSQRPL GSRHVSPIMM SFGGGGGCAA ESSTEDLNKF HQSFSGYGVD QFHHYQPKKR
201: FRTKFNEEQK EKMMEFAEKI GWRMTKLEDD EVNRFCREIK VKRQVFKVWM HNNKQAAKKK DL

Arabidopsis Description

ZHD6Zinc-finger homeodomain protein 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZPW7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.