Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1A01G418600.1 | Wheat | nucleus | 83.2 | 92.44 |
| HORVU1Hr1G091470.1 | Barley | nucleus | 84.4 | 89.79 |
| TraesCS1B01G448600.1 | Wheat | nucleus | 90.0 | 89.29 |
| Os05t0579300-01 | Rice | nucleus | 62.4 | 61.18 |
| Zm00001d009674_P001 | Maize | nucleus | 54.8 | 57.32 |
| TraesCS3D01G224100.1 | Wheat | nucleus | 49.2 | 52.12 |
| OQU78488 | Sorghum | plastid | 61.2 | 41.02 |
| TraesCS5D01G149400.1 | Wheat | cytosol | 14.8 | 39.36 |
| TraesCS5D01G234700.1 | Wheat | mitochondrion | 12.8 | 34.41 |
| CDY37252 | Canola | nucleus | 31.6 | 30.27 |
| TraesCS5D01G253100.1 | Wheat | nucleus | 35.6 | 30.07 |
| CDY62531 | Canola | nucleus | 31.6 | 30.04 |
| AT3G50890.1 | Thale cress | nucleus | 29.6 | 29.72 |
| Bra036852.1-P | Field mustard | nucleus | 26.0 | 29.68 |
| CDX77960 | Canola | nucleus | 26.0 | 29.68 |
| CDX90679 | Canola | nucleus | 28.8 | 29.63 |
| PGSC0003DMT400009581 | Potato | nucleus | 32.8 | 28.87 |
| CDX73775 | Canola | nucleus | 24.8 | 28.84 |
| CDY70550 | Canola | nucleus | 29.6 | 28.79 |
| CDY70108 | Canola | nucleus | 30.4 | 28.68 |
| TraesCS1D01G064300.1 | Wheat | mitochondrion | 19.6 | 28.32 |
| Bra037224.1-P | Field mustard | nucleus | 30.0 | 28.3 |
| Solyc04g080490.2.1 | Tomato | nucleus | 32.8 | 28.28 |
| CDY28987 | Canola | nucleus | 27.6 | 28.16 |
| AT2G18350.1 | Thale cress | nucleus | 29.2 | 27.86 |
| VIT_18s0001g12580.t01 | Wine grape | nucleus | 35.2 | 27.85 |
| CDY71124 | Canola | nucleus | 28.0 | 27.24 |
| CDX85886 | Canola | nucleus | 32.0 | 27.21 |
| Bra015857.1-P | Field mustard | nucleus | 32.8 | 27.15 |
| CDY45419 | Canola | nucleus | 31.2 | 27.08 |
| CDX68137 | Canola | nucleus | 32.0 | 26.94 |
| Bra008185.1-P | Field mustard | nucleus | 31.6 | 26.87 |
| Bra003759.1-P | Field mustard | nucleus | 31.6 | 26.87 |
| CDX73152 | Canola | nucleus | 32.0 | 26.76 |
| TraesCS2D01G303900.1 | Wheat | nucleus | 30.4 | 25.94 |
| Solyc02g085160.1.1 | Tomato | nucleus | 30.0 | 25.6 |
| AT1G75240.1 | Thale cress | nucleus | 31.2 | 25.24 |
| GSMUA_Achr3P19060_001 | Banana | nucleus | 24.0 | 25.0 |
| PGSC0003DMT400009033 | Potato | nucleus | 30.0 | 24.83 |
| GSMUA_Achr6P24230_001 | Banana | nucleus | 21.6 | 24.22 |
| KRH08258 | Soybean | nucleus | 31.6 | 24.01 |
| KRH69909 | Soybean | nucleus | 32.0 | 23.95 |
| TraesCS4D01G086300.1 | Wheat | nucleus | 37.2 | 23.91 |
| TraesCS6D01G253700.1 | Wheat | nucleus | 44.4 | 23.87 |
| Bra012882.1-P | Field mustard | nucleus | 25.2 | 23.77 |
| KRH76785 | Soybean | nucleus | 29.6 | 23.34 |
| KRH28682 | Soybean | nucleus | 30.0 | 22.32 |
| TraesCS5D01G234600.1 | Wheat | nucleus | 33.6 | 21.71 |
| VIT_04s0023g01880.t01 | Wine grape | nucleus | 31.2 | 18.01 |
Protein Annotations
| EnsemblPlants:TraesCS1D01G426300.1 | EnsemblPlantsGene:TraesCS1D01G426300 | Gene3D:1.10.10.60 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:Homeodomain_ZF_HD | InterPro:IPR006456 | InterPro:ZF_HD_homeobox_Cys/His_dimer | PANTHER:PTHR31948 |
| PANTHER:PTHR31948:SF30 | PFAM:PD125774 | PFAM:PF04770 | PFscan:PS51523 | SEG:seg | SUPFAM:SSF46689 |
| TIGRFAMs:TIGR01565 | TIGRFAMs:TIGR01566 | MapMan:15.5.3.13 | : | : | : |
Description
No Description!
Coordinates
chr1D:+:479540271..479541023
Molecular Weight (calculated)
27375.0 Da
IEP (calculated)
10.198
GRAVY (calculated)
-0.981
Length
250 amino acids
Sequence
(BLAST)
(BLAST)
001: MEFTGPEHAA GTPPGTRAPS DASSGNSGAA GSWEARYREC LRNHAAAQGG HAVDGCGEFM PSGAHDLLRC AACGCHRSFH RRDDGQQHPR LFLPAPAATP
101: TTAPRVPLLM PPPQHHHPYA AGHPLAPPFA YNPHHHQYQR TPSGGGTTTE SSSEEPGPGP PSTSAPGQGH GQARRPKRFR TRFTAEQRGQ MLALAERVGW
201: RMLKQDEALV EQLCAQAGVR RQVFKVWMHN NKHHRRQPQP PQSQQQQQQR
101: TTAPRVPLLM PPPQHHHPYA AGHPLAPPFA YNPHHHQYQR TPSGGGTTTE SSSEEPGPGP PSTSAPGQGH GQARRPKRFR TRFTAEQRGQ MLALAERVGW
201: RMLKQDEALV EQLCAQAGVR RQVFKVWMHN NKHHRRQPQP PQSQQQQQQR
001: MNFEDQEEDM EMSGVNPPCG YDSLSGEGAT SSGGGGVGRS KGVGAKIRYR ECLKNHAVNI GGHAVDGCCE FMPSGEDGTL DALKCAACGC HRNFHRKETE
101: SIGGRAHRVP TYYNRPPQPH QPPGYLHLTS PAAPYRPPAA SGDEEDTSNP SSSGGTTKRF RTKFTAEQKE KMLAFAERLG WRIQKHDDVA VEQFCAETGV
201: RRQVLKIWMH NNKNSLDGYQ VFKRYEATSA H
101: SIGGRAHRVP TYYNRPPQPH QPPGYLHLTS PAAPYRPPAA SGDEEDTSNP SSSGGTTKRF RTKFTAEQKE KMLAFAERLG WRIQKHDDVA VEQFCAETGV
201: RRQVLKIWMH NNKNSLDGYQ VFKRYEATSA H
Arabidopsis Description
ATHB22homeobox protein 22 [Source:TAIR;Acc:AT4G24660]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.