Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra003759.1-P | Field mustard | nucleus | 91.5 | 91.5 |
| CDX68137 | Canola | nucleus | 92.18 | 91.25 |
| CDY62531 | Canola | nucleus | 74.49 | 83.27 |
| CDY37252 | Canola | nucleus | 73.81 | 83.14 |
| CDX73152 | Canola | nucleus | 82.99 | 81.61 |
| CDY45419 | Canola | nucleus | 79.93 | 81.6 |
| CDY21695 | Canola | mitochondrion | 13.95 | 46.59 |
| CDX83807 | Canola | mitochondrion | 13.61 | 45.45 |
| CDX81897 | Canola | mitochondrion | 13.61 | 45.45 |
| CDX88950 | Canola | nucleus | 32.31 | 45.24 |
| CDY24844 | Canola | nucleus | 31.97 | 44.76 |
| CDX96695 | Canola | mitochondrion | 13.27 | 44.32 |
| CDY08945 | Canola | nucleus | 31.63 | 44.29 |
| CDX73105 | Canola | mitochondrion | 13.95 | 43.62 |
| CDY26722 | Canola | mitochondrion | 12.93 | 43.18 |
| CDY19248 | Canola | mitochondrion | 12.93 | 43.18 |
| CDY34299 | Canola | nucleus | 32.99 | 43.11 |
| CDY03431 | Canola | nucleus | 32.65 | 43.05 |
| CDX86404 | Canola | mitochondrion | 13.27 | 42.86 |
| CDX96558 | Canola | mitochondrion | 13.61 | 42.55 |
| CDX85228 | Canola | mitochondrion, nucleus | 12.93 | 41.76 |
| CDY00105 | Canola | mitochondrion | 13.61 | 40.82 |
| CDY20009 | Canola | mitochondrion | 13.61 | 40.82 |
| CDX68172 | Canola | mitochondrion | 13.27 | 40.21 |
| CDX85849 | Canola | mitochondrion | 13.27 | 40.21 |
| PGSC0003DMT400009581 | Potato | nucleus | 37.76 | 39.08 |
| Solyc04g080490.2.1 | Tomato | nucleus | 38.1 | 38.62 |
| CDY70550 | Canola | nucleus | 33.33 | 38.13 |
| CDY70108 | Canola | nucleus | 34.01 | 37.74 |
| CDY54719 | Canola | nucleus | 30.61 | 37.34 |
| CDX73775 | Canola | nucleus | 27.21 | 37.21 |
| CDX77960 | Canola | nucleus | 27.55 | 36.99 |
| CDX81284 | Canola | nucleus | 31.29 | 36.08 |
| CDX88760 | Canola | nucleus | 22.11 | 35.91 |
| TraesCS1A01G418600.1 | Wheat | nucleus | 27.21 | 35.56 |
| CDY71124 | Canola | nucleus | 30.95 | 35.41 |
| CDY69628 | Canola | nucleus | 21.43 | 35.2 |
| CDY33960 | Canola | nucleus | 31.97 | 34.94 |
| CDY37827 | Canola | nucleus | 32.31 | 34.93 |
| CDY46298 | Canola | cytosol | 9.86 | 34.52 |
| VIT_18s0001g12580.t01 | Wine grape | nucleus | 37.07 | 34.49 |
| CDX95914 | Canola | nucleus | 26.53 | 33.77 |
| CDX90679 | Canola | nucleus | 27.55 | 33.33 |
| HORVU1Hr1G091470.1 | Barley | nucleus | 26.53 | 33.19 |
| Zm00001d009674_P001 | Maize | nucleus | 26.87 | 33.05 |
| Os05t0579300-01 | Rice | nucleus | 28.57 | 32.94 |
| TraesCS1B01G448600.1 | Wheat | nucleus | 28.23 | 32.94 |
| CDY14559 | Canola | nucleus | 32.65 | 32.76 |
| CDY28987 | Canola | nucleus | 26.87 | 32.24 |
| CDY09363 | Canola | nucleus | 32.65 | 32.21 |
| CDY41692 | Canola | nucleus | 32.65 | 32.0 |
| TraesCS1D01G426300.1 | Wheat | nucleus | 27.21 | 32.0 |
| CDY01760 | Canola | nucleus | 27.21 | 31.25 |
| Os01t0635550-00 | Rice | nucleus | 24.49 | 31.03 |
| TraesCS3B01G258400.1 | Wheat | nucleus | 24.49 | 31.03 |
| CDY44079 | Canola | nucleus | 26.53 | 30.59 |
| CDY28566 | Canola | nucleus | 26.53 | 30.59 |
| CDY53549 | Canola | nucleus | 32.65 | 30.57 |
| CDY45257 | Canola | nucleus | 32.31 | 30.55 |
| CDX81638 | Canola | nucleus | 32.65 | 30.48 |
| GSMUA_Achr2P23010_001 | Banana | nucleus | 29.93 | 30.24 |
| TraesCS3A01G226100.1 | Wheat | nucleus | 24.15 | 30.21 |
| GSMUA_Achr10P... | Banana | nucleus | 27.21 | 30.19 |
| TraesCS3D01G224100.1 | Wheat | nucleus | 24.15 | 30.08 |
| CDY20008 | Canola | nucleus | 28.57 | 29.89 |
| CDY39311 | Canola | nucleus | 30.95 | 29.74 |
| CDX69541 | Canola | nucleus | 26.19 | 29.28 |
| GSMUA_Achr3P31090_001 | Banana | nucleus | 27.55 | 28.62 |
| CDY00104 | Canola | nucleus | 29.93 | 28.21 |
| GSMUA_Achr4P14910_001 | Banana | nucleus | 31.29 | 27.88 |
| GSMUA_Achr8P27010_001 | Banana | nucleus | 29.59 | 27.1 |
| CDX74428 | Canola | nucleus | 28.91 | 26.81 |
| CDX85230 | Canola | nucleus | 30.61 | 26.55 |
| GSMUA_Achr4P07850_001 | Banana | nucleus | 28.91 | 25.68 |
| GSMUA_Achr7P25600_001 | Banana | nucleus | 30.27 | 25.65 |
| CDY56033 | Canola | nucleus | 24.15 | 25.63 |
| CDX85059 | Canola | nucleus | 20.75 | 25.63 |
| CDX86403 | Canola | nucleus | 29.93 | 25.58 |
| GSMUA_Achr6P24230_001 | Banana | nucleus | 18.71 | 24.66 |
| GSMUA_Achr3P19060_001 | Banana | nucleus | 18.71 | 22.92 |
| OQU78488 | Sorghum | plastid | 28.57 | 22.52 |
| GSMUA_Achr6P27240_001 | Banana | plastid | 29.25 | 22.4 |
| GSMUA_Achr6P22120_001 | Banana | nucleus | 30.27 | 22.36 |
| KXG30914 | Sorghum | nucleus | 28.91 | 20.94 |
| Zm00001d017784_P001 | Maize | nucleus | 29.25 | 20.62 |
| Os02t0706600-00 | Rice | nucleus | 29.25 | 20.14 |
| Zm00001d051573_P001 | Maize | nucleus | 28.91 | 19.06 |
| TraesCS6B01G301000.1 | Wheat | nucleus | 28.57 | 18.22 |
| TraesCS6A01G273700.1 | Wheat | nucleus | 28.23 | 17.85 |
| TraesCS6D01G253700.1 | Wheat | nucleus | 28.23 | 17.85 |
| HORVU6Hr1G069090.1 | Barley | nucleus | 26.53 | 16.92 |
| HORVU6Hr1G069070.1 | Barley | plastid | 10.54 | 11.03 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.13 | GO:A0A078D9F5 | EnsemblPlants:CDX85886 | ProteinID:CDX85886 | ProteinID:CDX85886.1 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00143692001 | InterPro:Homeobox-like_sf |
| InterPro:Homeodomain_ZF_HD | InterPro:IPR006456 | PFAM:PD125774 | PFAM:PF04770 | PFscan:PS51523 | PANTHER:PTHR31948 |
| PANTHER:PTHR31948:SF43 | SUPFAM:SSF46689 | TIGRFAMs:TIGR01565 | TIGRFAMs:TIGR01566 | UniParc:UPI0004EDEA01 | InterPro:ZF_HD_homeobox_Cys/His_dimer |
| SEG:seg | : | : | : | : | : |
Description
BnaC06g22480D
Coordinates
chrLK031843:+:551940..553122
Molecular Weight (calculated)
32431.1 Da
IEP (calculated)
9.052
GRAVY (calculated)
-0.948
Length
294 amino acids
Sequence
(BLAST)
(BLAST)
001: MDMRSHEMIE RRRDDNGNNG VGNINSIITR EDNGNKTRVS CNSQTLDPHQ SKSPSSFSIS TVRYRECLKN HAASVGGSVY DGCGEFMPSG EEGTLEALRC
101: AACHCHRNFH RKENDGVGSS DGSSHHRHHH HHHQYGGGRR PPPRNMMLNP LMLPPPPSYA PLHHHKYGMS PPGGGGMVTP MSVYGGVGGG GAESSSEDLN
201: MYGQSSGEHA GGATPGQTAF SMKRFRTKFT AEQKEKMMEF AEKLGWRMNK QDEEELRRFC SEIGVKRQVF KVWMHNNKNT ARKPPPTSTA SGAL
101: AACHCHRNFH RKENDGVGSS DGSSHHRHHH HHHQYGGGRR PPPRNMMLNP LMLPPPPSYA PLHHHKYGMS PPGGGGMVTP MSVYGGVGGG GAESSSEDLN
201: MYGQSSGEHA GGATPGQTAF SMKRFRTKFT AEQKEKMMEF AEKLGWRMNK QDEEELRRFC SEIGVKRQVF KVWMHNNKNT ARKPPPTSTA SGAL
001: MDMRSHEMIE RRREDNGNNN GGVVISNIIS TNIDDNCNGN NNNTRVSCNS QTLDHHQSKS PSSFSISAAA KPTVRYRECL KNHAASVGGS VHDGCGEFMP
101: SGEEGTIEAL RCAACDCHRN FHRKEMDGVG SSDLISHHRH HHYHHNQYGG GGGRRPPPPN MMLNPLMLPP PPNYQPIHHH KYGMSPPGGG GMVTPMSVAY
201: GGGGGGAESS SEDLNLYGQS SGEGAGAAAG QMAFSMSSSK KRFRTKFTTD QKERMMDFAE KLGWRMNKQD EEELKRFCGE IGVKRQVFKV WMHNNKNNAK
301: KPPTPTTTL
101: SGEEGTIEAL RCAACDCHRN FHRKEMDGVG SSDLISHHRH HHYHHNQYGG GGGRRPPPPN MMLNPLMLPP PPNYQPIHHH KYGMSPPGGG GMVTPMSVAY
201: GGGGGGAESS SEDLNLYGQS SGEGAGAAAG QMAFSMSSSK KRFRTKFTTD QKERMMDFAE KLGWRMNKQD EEELKRFCGE IGVKRQVFKV WMHNNKNNAK
301: KPPTPTTTL
Arabidopsis Description
ZHD5ZHD5 [Source:UniProtKB/TrEMBL;Acc:A0A178WFZ4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.