Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX88950 | Canola | nucleus | 97.14 | 97.14 |
| CDY24844 | Canola | nucleus | 95.71 | 95.71 |
| CDY03431 | Canola | nucleus | 89.52 | 84.3 |
| CDY34299 | Canola | nucleus | 89.52 | 83.56 |
| AT4G24660.2 | Thale cress | nucleus | 86.19 | 78.36 |
| CDY21695 | Canola | mitochondrion | 20.95 | 50.0 |
| CDX81897 | Canola | mitochondrion | 20.48 | 48.86 |
| CDX83807 | Canola | mitochondrion | 20.0 | 47.73 |
| CDY19248 | Canola | mitochondrion | 19.52 | 46.59 |
| CDY26722 | Canola | mitochondrion | 19.52 | 46.59 |
| CDX96695 | Canola | mitochondrion | 19.05 | 45.45 |
| CDX85228 | Canola | mitochondrion, nucleus | 19.05 | 43.96 |
| CDX86404 | Canola | mitochondrion | 19.05 | 43.96 |
| CDX73105 | Canola | mitochondrion | 19.52 | 43.62 |
| CDX96558 | Canola | mitochondrion | 19.05 | 42.55 |
| CDX85849 | Canola | mitochondrion | 19.52 | 42.27 |
| CDX68172 | Canola | mitochondrion | 19.52 | 42.27 |
| CDX81284 | Canola | nucleus | 49.05 | 40.39 |
| CDY54719 | Canola | nucleus | 46.19 | 40.25 |
| CDY00105 | Canola | mitochondrion | 18.1 | 38.78 |
| CDY20009 | Canola | mitochondrion | 18.1 | 38.78 |
| CDX77960 | Canola | nucleus | 39.52 | 37.9 |
| CDX73775 | Canola | nucleus | 38.57 | 37.67 |
| CDY33960 | Canola | nucleus | 47.14 | 36.8 |
| CDY37827 | Canola | nucleus | 47.14 | 36.4 |
| CDX88760 | Canola | nucleus | 30.95 | 35.91 |
| CDY69628 | Canola | nucleus | 30.48 | 35.75 |
| CDY14559 | Canola | nucleus | 49.52 | 35.49 |
| CDY37252 | Canola | nucleus | 43.33 | 34.87 |
| CDY62531 | Canola | nucleus | 43.33 | 34.6 |
| CDX95914 | Canola | nucleus | 37.14 | 33.77 |
| CDX90679 | Canola | nucleus | 38.1 | 32.92 |
| CDY45419 | Canola | nucleus | 43.81 | 31.94 |
| CDY70550 | Canola | nucleus | 39.05 | 31.91 |
| CDX85886 | Canola | nucleus | 44.29 | 31.63 |
| CDY28987 | Canola | nucleus | 36.67 | 31.43 |
| CDX68137 | Canola | nucleus | 43.81 | 30.98 |
| CDY70108 | Canola | nucleus | 39.05 | 30.94 |
| CDY09363 | Canola | nucleus | 43.81 | 30.87 |
| CDY01760 | Canola | nucleus | 37.62 | 30.86 |
| CDY28566 | Canola | nucleus | 37.14 | 30.59 |
| CDY44079 | Canola | nucleus | 37.14 | 30.59 |
| CDX73152 | Canola | nucleus | 43.33 | 30.43 |
| CDY41692 | Canola | nucleus | 43.33 | 30.33 |
| CDX69541 | Canola | nucleus | 37.14 | 29.66 |
| CDY53549 | Canola | nucleus | 43.33 | 28.98 |
| CDY45257 | Canola | nucleus | 42.86 | 28.94 |
| CDX81638 | Canola | nucleus | 43.33 | 28.89 |
| CDY20008 | Canola | nucleus | 38.57 | 28.83 |
| CDY71124 | Canola | nucleus | 35.24 | 28.79 |
| CDY39311 | Canola | nucleus | 40.48 | 27.78 |
| CDY00104 | Canola | nucleus | 39.05 | 26.28 |
| CDX85059 | Canola | nucleus | 29.52 | 26.05 |
| CDX74428 | Canola | nucleus | 38.1 | 25.24 |
| CDY46298 | Canola | cytosol | 10.0 | 25.0 |
| CDY56033 | Canola | nucleus | 32.38 | 24.55 |
| CDX85230 | Canola | nucleus | 38.57 | 23.89 |
| CDX86403 | Canola | nucleus | 37.62 | 22.97 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.13 | GO:A0A078F342 | UniProt:A0A078F342 | EnsemblPlants:CDY08945 | ProteinID:CDY08945 |
| ProteinID:CDY08945.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| EnsemblPlantsGene:GSBRNA2T00000979001 | InterPro:Homeobox-like_sf | InterPro:Homeodomain_ZF_HD | InterPro:IPR006456 | PFAM:PD125774 | PFAM:PF04770 |
| PFscan:PS51523 | PANTHER:PTHR31948 | PANTHER:PTHR31948:SF5 | SUPFAM:SSF46689 | TIGRFAMs:TIGR01565 | TIGRFAMs:TIGR01566 |
| UniParc:UPI0004EB90EA | InterPro:ZF_HD_homeobox_Cys/His_dimer | SEG:seg | : | : | : |
Description
BnaC08g11750DBnaC08g11750D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F342]
Coordinates
chrLK031990:-:650082..650869
Molecular Weight (calculated)
23104.1 Da
IEP (calculated)
7.813
GRAVY (calculated)
-0.893
Length
210 amino acids
Sequence
(BLAST)
(BLAST)
001: MNFEEQEEEM EMSGVHPPGG YDSMSGEGAT SSGGGGGGRR TSVGEKTKYR ECLKNHAVNI AGHAVDGCCE FMPSGEDGSL DALKCAACGC HRNFHRKETE
101: MVSGRAHIVP TYYNRPPQLP PPGYRQPAAS ADEEDTSNPS SSGGTKAKRF RTKFTAEQKE KMFAFAERLG WRMQKHDDVA VEQFCAETGV RRQVLKIWMH
201: NNKNSLGKKP
101: MVSGRAHIVP TYYNRPPQLP PPGYRQPAAS ADEEDTSNPS SSGGTKAKRF RTKFTAEQKE KMFAFAERLG WRMQKHDDVA VEQFCAETGV RRQVLKIWMH
201: NNKNSLGKKP
001: MNFEDQEEDM EMSGVNPPCG YDSLSGEGAT SSGGGGVGRS KGVGAKIRYR ECLKNHAVNI GGHAVDGCCE FMPSGEDGTL DALKCAACGC HRNFHRKETE
101: SIGGRAHRVP TYYNRPPQPH QPPGYLHLTS PAAPYRPPAA SGDEEDTSNP SSSGGTTKRF RTKFTAEQKE KMLAFAERLG WRIQKHDDVA VEQFCAETGV
201: RRQVLKIWMH NNKNSLGKKP
101: SIGGRAHRVP TYYNRPPQPH QPPGYLHLTS PAAPYRPPAA SGDEEDTSNP SSSGGTTKRF RTKFTAEQKE KMLAFAERLG WRIQKHDDVA VEQFCAETGV
201: RRQVLKIWMH NNKNSLGKKP
Arabidopsis Description
ATHB22homeobox protein 22 [Source:TAIR;Acc:AT4G24660]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.