Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 2
- nucleus 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY46298 | Canola | cytosol | 28.02 | 85.71 |
| CDY70108 | Canola | nucleus | 73.15 | 70.94 |
| CDY70550 | Canola | nucleus | 69.65 | 69.65 |
| AT2G18350.1 | Thale cress | nucleus | 68.48 | 67.18 |
| CDX86404 | Canola | mitochondrion | 16.73 | 47.25 |
| CDX85228 | Canola | mitochondrion, nucleus | 16.34 | 46.15 |
| CDY20009 | Canola | mitochondrion | 16.34 | 42.86 |
| CDY00105 | Canola | mitochondrion | 16.34 | 42.86 |
| CDX73105 | Canola | mitochondrion | 15.18 | 41.49 |
| CDX96558 | Canola | mitochondrion | 15.18 | 41.49 |
| CDY26722 | Canola | mitochondrion | 14.01 | 40.91 |
| CDY21695 | Canola | mitochondrion | 14.01 | 40.91 |
| CDY19248 | Canola | mitochondrion | 14.01 | 40.91 |
| CDX81897 | Canola | mitochondrion | 14.01 | 40.91 |
| CDX83807 | Canola | mitochondrion | 14.01 | 40.91 |
| CDX96695 | Canola | mitochondrion | 13.62 | 39.77 |
| CDX85849 | Canola | mitochondrion | 14.4 | 38.14 |
| CDX68172 | Canola | mitochondrion | 14.4 | 38.14 |
| CDY24844 | Canola | nucleus | 29.96 | 36.67 |
| CDX88950 | Canola | nucleus | 29.96 | 36.67 |
| CDY37252 | Canola | nucleus | 35.8 | 35.25 |
| CDY08945 | Canola | nucleus | 28.79 | 35.24 |
| CDX77960 | Canola | nucleus | 29.96 | 35.16 |
| CDY62531 | Canola | nucleus | 35.8 | 34.98 |
| CDX73775 | Canola | nucleus | 28.79 | 34.42 |
| CDY34299 | Canola | nucleus | 29.96 | 34.22 |
| CDY03431 | Canola | nucleus | 28.79 | 33.18 |
| CDY45419 | Canola | nucleus | 35.41 | 31.6 |
| CDX90679 | Canola | nucleus | 29.57 | 31.28 |
| Solyc04g080490.2.1 | Tomato | nucleus | 35.02 | 31.03 |
| PGSC0003DMT400009581 | Potato | nucleus | 34.24 | 30.99 |
| CDX68137 | Canola | nucleus | 35.8 | 30.98 |
| CDX85886 | Canola | nucleus | 35.41 | 30.95 |
| TraesCS1A01G418600.1 | Wheat | nucleus | 26.85 | 30.67 |
| CDY28987 | Canola | nucleus | 28.79 | 30.2 |
| CDX73152 | Canola | nucleus | 35.02 | 30.1 |
| CDX88760 | Canola | nucleus | 21.01 | 29.83 |
| HORVU1Hr1G091470.1 | Barley | nucleus | 27.24 | 29.79 |
| Zm00001d009674_P001 | Maize | nucleus | 27.63 | 29.71 |
| Os01t0635550-00 | Rice | nucleus | 26.07 | 28.88 |
| TraesCS3B01G258400.1 | Wheat | nucleus | 26.07 | 28.88 |
| CDY69628 | Canola | nucleus | 19.84 | 28.49 |
| Os05t0579300-01 | Rice | nucleus | 28.02 | 28.24 |
| TraesCS3A01G226100.1 | Wheat | nucleus | 25.68 | 28.09 |
| TraesCS1D01G426300.1 | Wheat | nucleus | 27.24 | 28.0 |
| TraesCS3D01G224100.1 | Wheat | nucleus | 25.68 | 27.97 |
| TraesCS1B01G448600.1 | Wheat | nucleus | 27.24 | 27.78 |
| VIT_18s0001g12580.t01 | Wine grape | nucleus | 33.85 | 27.53 |
| CDY09363 | Canola | nucleus | 31.91 | 27.52 |
| CDY54719 | Canola | nucleus | 25.68 | 27.39 |
| CDY41692 | Canola | nucleus | 31.91 | 27.33 |
| GSMUA_Achr3P31090_001 | Banana | nucleus | 29.96 | 27.21 |
| CDX95914 | Canola | nucleus | 24.12 | 26.84 |
| GSMUA_Achr10P... | Banana | nucleus | 27.24 | 26.42 |
| CDX81284 | Canola | nucleus | 26.07 | 26.27 |
| CDY53549 | Canola | nucleus | 31.13 | 25.48 |
| CDY44079 | Canola | nucleus | 24.9 | 25.1 |
| CDX69541 | Canola | nucleus | 25.68 | 25.1 |
| CDX81638 | Canola | nucleus | 30.74 | 25.08 |
| CDY37827 | Canola | nucleus | 26.46 | 25.0 |
| CDY33960 | Canola | nucleus | 26.07 | 24.91 |
| CDY45257 | Canola | nucleus | 29.96 | 24.76 |
| GSMUA_Achr2P23010_001 | Banana | nucleus | 28.02 | 24.74 |
| CDY28566 | Canola | nucleus | 24.51 | 24.71 |
| CDY01760 | Canola | nucleus | 24.12 | 24.22 |
| CDY20008 | Canola | nucleus | 26.46 | 24.2 |
| GSMUA_Achr4P14910_001 | Banana | nucleus | 30.74 | 23.94 |
| CDY14559 | Canola | nucleus | 27.24 | 23.89 |
| CDY39311 | Canola | nucleus | 28.4 | 23.86 |
| GSMUA_Achr8P27010_001 | Banana | nucleus | 29.57 | 23.68 |
| GSMUA_Achr7P25600_001 | Banana | nucleus | 31.52 | 23.34 |
| GSMUA_Achr4P07850_001 | Banana | nucleus | 29.96 | 23.26 |
| CDX85059 | Canola | nucleus | 20.62 | 22.27 |
| CDY00104 | Canola | nucleus | 26.46 | 21.79 |
| CDX74428 | Canola | nucleus | 25.68 | 20.82 |
| CDY56033 | Canola | nucleus | 21.79 | 20.22 |
| CDX85230 | Canola | nucleus | 26.46 | 20.06 |
| GSMUA_Achr6P27240_001 | Banana | plastid | 29.57 | 19.79 |
| OQU78488 | Sorghum | plastid | 28.4 | 19.57 |
| CDX86403 | Canola | nucleus | 26.07 | 19.48 |
| GSMUA_Achr6P22120_001 | Banana | nucleus | 29.18 | 18.84 |
| KXG30914 | Sorghum | nucleus | 29.18 | 18.47 |
| GSMUA_Achr6P24230_001 | Banana | nucleus | 15.95 | 18.39 |
| Os02t0706600-00 | Rice | nucleus | 29.96 | 18.03 |
| Zm00001d017784_P001 | Maize | nucleus | 29.18 | 17.99 |
| GSMUA_Achr3P19060_001 | Banana | nucleus | 16.34 | 17.5 |
| Zm00001d051573_P001 | Maize | nucleus | 29.18 | 16.82 |
| TraesCS6B01G301000.1 | Wheat | nucleus | 29.96 | 16.7 |
| TraesCS6D01G253700.1 | Wheat | nucleus | 29.96 | 16.56 |
| TraesCS6A01G273700.1 | Wheat | nucleus | 29.96 | 16.56 |
| HORVU6Hr1G069090.1 | Barley | nucleus | 28.02 | 15.62 |
| HORVU6Hr1G069070.1 | Barley | plastid | 10.51 | 9.61 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.13 | GO:A0A078JWH8 | UniProt:A0A078JWH8 | EnsemblPlants:CDY71124 | ProteinID:CDY71124 |
| ProteinID:CDY71124.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | EnsemblPlantsGene:GSBRNA2T00011403001 | InterPro:Homeobox-like_sf | InterPro:Homeobox_dom |
| InterPro:Homeodomain_ZF_HD | InterPro:IPR001356 | InterPro:IPR006456 | PFAM:PD125774 | PFAM:PF04770 | PFscan:PS50071 |
| PFscan:PS51523 | PANTHER:PTHR31948 | PANTHER:PTHR31948:SF9 | SUPFAM:SSF46689 | TIGRFAMs:TIGR01565 | TIGRFAMs:TIGR01566 |
| UniParc:UPI0004EE6423 | InterPro:ZF_HD_homeobox_Cys/His_dimer | : | : | : | : |
Description
BnaCnng71430DBnaCnng71430D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JWH8]
Coordinates
chrLK044564:-:586..1359
Molecular Weight (calculated)
29360.8 Da
IEP (calculated)
9.912
GRAVY (calculated)
-0.825
Length
257 amino acids
Sequence
(BLAST)
(BLAST)
001: MGDGKTKIIS KSSNPRSLYS SVHLLPNHRQ RETHKSITIS NGSNLDLDLD TNPISFAAPA PRSYVRLQTT SPTRSVRYRE CQRNHAASSG GHVIDVCGKF
101: MSSGEEGTAE SLLCAACDCH RSFHRNEIDG MFVVKFNSFG HSPRPLVSRH VSPIMMSFAR GGRDPAESST EDVNKFHQYF CGNGVDQSQY HPKKRFRTKF
201: NQEQKEKMEE FAEKIGWRMS KPEDSEVNLF CREINLKRQL FKVWMHNNKQ TAKKKEM
101: MSSGEEGTAE SLLCAACDCH RSFHRNEIDG MFVVKFNSFG HSPRPLVSRH VSPIMMSFAR GGRDPAESST EDVNKFHQYF CGNGVDQSQY HPKKRFRTKF
201: NQEQKEKMEE FAEKIGWRMS KPEDSEVNLF CREINLKRQL FKVWMHNNKQ TAKKKEM
001: MEVREKKDEK MEMTRRKSSA LDHHRLPPYT YSQTANKEKP TTKRNGSDPD PDPDLDTNPI SISHAPRSYA RPQTTSPGKA RYRECQKNHA ASSGGHVVDG
101: CGEFMSSGEE GTVESLLCAA CDCHRSFHRK EIDGLFVVNF NSFGHSQRPL GSRHVSPIMM SFGGGGGCAA ESSTEDLNKF HQSFSGYGVD QFHHYQPKKR
201: FRTKFNEEQK EKMMEFAEKI GWRMTKLEDD EVNRFCREIK VKRQVFKVWM HNNKQAAKKK DL
101: CGEFMSSGEE GTVESLLCAA CDCHRSFHRK EIDGLFVVNF NSFGHSQRPL GSRHVSPIMM SFGGGGGCAA ESSTEDLNKF HQSFSGYGVD QFHHYQPKKR
201: FRTKFNEEQK EKMMEFAEKI GWRMTKLEDD EVNRFCREIK VKRQVFKVWM HNNKQAAKKK DL
Arabidopsis Description
ZHD6Zinc-finger homeodomain protein 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZPW7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.