Factsheet for Zm00001d051573_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	endoplasmic reticulum
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d005757_P001
Zm00001d005931_P001
Zm00001d009674_P001
Zm00001d017784_P001
Zm00001d020460_P001
Zm00001d020774_P001
Zm00001d031840_P001
Zm00001d032175_P001
Zm00001d041780_P001
Zm00001d049000_P001
Zm00001d050443_P001
Zm00001d051573_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G75240.1	Zm00001d041780_P001	AT1G14440.1	16428600
AT1G75240.1	Zm00001d049000_P001	AT1G14440.1	16428600
AT1G75240.1	Zm00001d009674_P001	AT1G75240.1	16428600
AT1G75240.1	Zm00001d017784_P001	AT1G75240.1	16428600
AT1G75240.1	Zm00001d051573_P001	AT1G75240.1	16428600
AT1G75240.1	Zm00001d009674_P001	AT3G50890.1	16428600
AT1G75240.1	Zm00001d017784_P001	AT3G50890.1	16428600
AT1G75240.1	Zm00001d051573_P001	AT3G50890.1	16428600
AT1G75240.1	Zm00001d005757_P001	AT5G15210.1	16428600
AT1G75240.1	Zm00001d020460_P001	AT5G15210.1	16428600
AT1G75240.1	Zm00001d032175_P001	AT5G15210.1	16428600
AT1G75240.1	Zm00001d050443_P001	AT5G15210.1	16428600
AT1G75240.1	Zm00001d005931_P001	AT5G65410.1	16428600
AT1G75240.1	Zm00001d020774_P001	AT5G65410.1	16428600
AT1G75240.1	Zm00001d031840_P001	AT5G65410.1	16428600
AT2G18350.1	Zm00001d041780_P001	AT1G14440.1	16428600
AT2G18350.1	Zm00001d049000_P001	AT1G14440.1	16428600
AT2G18350.1	Zm00001d005931_P001	AT5G65410.1	16428600
AT2G18350.1	Zm00001d020774_P001	AT5G65410.1	16428600
AT2G18350.1	Zm00001d031840_P001	AT5G65410.1	16428600
AT3G50890.1	Zm00001d041780_P001	AT1G14440.1	16428600
AT3G50890.1	Zm00001d049000_P001	AT1G14440.1	16428600
AT3G50890.1	Zm00001d009674_P001	AT1G75240.1	16428600
AT3G50890.1	Zm00001d017784_P001	AT1G75240.1	16428600
AT3G50890.1	Zm00001d051573_P001	AT1G75240.1	16428600
AT3G50890.1	Zm00001d005757_P001	AT5G15210.1	16428600
AT3G50890.1	Zm00001d020460_P001	AT5G15210.1	16428600
AT3G50890.1	Zm00001d032175_P001	AT5G15210.1	16428600
AT3G50890.1	Zm00001d050443_P001	AT5G15210.1	16428600
AT3G50890.1	Zm00001d005931_P001	AT5G65410.1	16428600
AT3G50890.1	Zm00001d020774_P001	AT5G65410.1	16428600
AT3G50890.1	Zm00001d031840_P001	AT5G65410.1	16428600

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG30914	Sorghum	nucleus	78.92	86.7
Zm00001d017784_P001	Maize	nucleus	78.48	83.93
Os02t0706600-00	Rice	nucleus	60.54	63.23
TraesCS6D01G253700.1	Wheat	nucleus	60.99	58.49
TraesCS6A01G273700.1	Wheat	nucleus	60.76	58.28
TraesCS6B01G301000.1	Wheat	nucleus	58.97	57.05
Zm00001d009674_P001	Maize	nucleus	25.11	46.86
Zm00001d023289_P001	Maize	cytosol	9.64	43.88
Zm00001d023286_P001	Maize	cytosol	9.64	43.88
GSMUA_Achr10P...	Banana	nucleus	25.11	42.26
Zm00001d052395_P001	Maize	plastid	8.07	41.86
GSMUA_Achr2P23010_001	Banana	nucleus	26.46	40.55
Zm00001d044662_P001	Maize	cytosol, plastid	8.74	39.0
HORVU6Hr1G069070.1	Barley	plastid	23.54	37.37
Zm00001d020774_P001	Maize	nucleus	21.75	35.53
Zm00001d005931_P001	Maize	nucleus	21.52	33.57
CDX73775	Canola	nucleus	15.92	33.02
CDX77960	Canola	nucleus	16.14	32.88
Bra036852.1-P	Field mustard	nucleus	16.14	32.88
Zm00001d032177_P001	Maize	mitochondrion	8.74	32.77
PGSC0003DMT400009581	Potato	nucleus	20.85	32.75
AT3G50890.1	Thale cress	nucleus	18.16	32.53
CDX90679	Canola	nucleus	17.71	32.51
Zm00001d031840_P001	Maize	nucleus	22.2	32.14
CDY28987	Canola	nucleus	17.26	31.43
CDY37252	Canola	nucleus	18.39	31.42
CDY62531	Canola	nucleus	18.39	31.18
Solyc04g080490.2.1	Tomato	nucleus	20.18	31.03
CDY70550	Canola	nucleus	17.71	30.74
Zm00001d050452_P001	Maize	mitochondrion	8.74	30.71
VIT_18s0001g12580.t01	Wine grape	nucleus	21.75	30.7
KRH76785	Soybean	nucleus	21.52	30.28
CDY70108	Canola	nucleus	17.94	30.19
Zm00001d033791_P001	Maize	cytosol, mitochondrion, nucleus	15.47	29.87
Bra037224.1-P	Field mustard	nucleus	17.71	29.81
Zm00001d020459_P001	Maize	mitochondrion	7.4	29.73
CDY45419	Canola	nucleus	19.06	29.51
AT2G18350.1	Thale cress	nucleus	17.26	29.39
CDY71124	Canola	nucleus	16.82	29.18
Zm00001d013409_P001	Maize	cytosol, mitochondrion, nucleus	15.7	29.17
Bra008185.1-P	Field mustard	nucleus	19.06	28.91
CDX85886	Canola	nucleus	19.06	28.91
CDX73152	Canola	nucleus	19.28	28.76
Zm00001d041780_P001	Maize	nucleus	22.42	28.65
KRH69909	Soybean	nucleus	21.3	28.44
Solyc02g085160.1.1	Tomato	nucleus	18.61	28.33
CDX68137	Canola	nucleus	18.83	28.28
KRH28682	Soybean	nucleus	21.3	28.27
Bra003759.1-P	Field mustard	nucleus	18.61	28.23
Bra015857.1-P	Field mustard	nucleus	19.06	28.15
Zm00001d003645_P001	Maize	nucleus	18.83	28.0
KRH08258	Soybean	nucleus	20.4	27.66
PGSC0003DMT400009033	Potato	nucleus	18.39	27.15
AT1G75240.1	Thale cress	nucleus	18.61	26.86
Bra012882.1-P	Field mustard	nucleus	15.7	26.42
Zm00001d020460_P001	Maize	nucleus	19.96	24.05
Zm00001d005757_P001	Maize	nucleus	19.28	23.82
Zm00001d049000_P001	Maize	plastid	21.75	23.1
Zm00001d032175_P001	Maize	cytosol	19.06	22.79
Zm00001d050443_P001	Maize	nucleus	18.39	22.4
VIT_04s0023g01880.t01	Wine grape	nucleus	18.39	18.94

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.13	ProteinID:AQK54588.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:Homeodomain_ZF_HD	InterPro:IPR006456	UniProt:K7U7M4
PFAM:PD125774	PFAM:PF04770	PFscan:PS51523	PANTHER:PTHR31948	PANTHER:PTHR31948:SF11	SUPFAM:SSF46689
TIGRFAMs:TIGR01565	TIGRFAMs:TIGR01566	UniParc:UPI000221A22F	InterPro:ZF_HD_homeobox_Cys/His_dimer	EnsemblPlantsGene:Zm00001d051573	EnsemblPlants:Zm00001d051573_P001
EnsemblPlants:Zm00001d051573_T001	SEG:seg	:	:	:	:

Description

ZF-HD-transcription factor 17Putative homeobox DNA-binding domain superfamily protein

Coordinates

chr4:-:163144095..163145435

Molecular Weight (calculated)

48230.3 Da

IEP (calculated)

7.144

GRAVY (calculated)

-0.793

Length

446 amino acids

Sequence
(BLAST)

001: MEYKRSSHVE DEDEDELEEE EEEDEEEEED EDEEARSHRY TTAAAAPLGT PQQQEVQAQA LGLGSHASLM DSAAFSRPLL PPNSSLVTQP PLPPPGFLPA
101: HRQPPQLHPR KAERERERDR AAGAQQPQLR RHQEPVRNNN GVLGGGGGAA PPSAASSTFG LASVRPVVEA PQWRYRECLR NHAARLGAHV LDGCCEFMPS
201: GSDGAAALAC AACGCHRSFH RREAIPGGVA AAAAVVSPSA VPVVTPTARA SANSSRVMPL LMAPPHMHTR PPHVPASPAS APAALTESSS EELRGHAPAH
301: PAAPPPPPPH AQVVALAGSA SAPPAPSKKR FRTKFTAEQK DRMREFAHRV GWRIHKPDAD AVDVFCAQVG VSRRVLKVWM HNNKHLAKVP PSPPSSQAQA
401: QAQPPPPPQQ HRHHNHHPPP PPPHHIHHHH HPPPPPQQEQ QHDMHE

Best Arabidopsis Sequence Match ( AT4G24660.1 )
(BLAST)

001: MNFEDQEEDM EMSGVNPPCG YDSLSGEGAT SSGGGGVGRS KGVGAKIRYR ECLKNHAVNI GGHAVDGCCE FMPSGEDGTL DALKCAACGC HRNFHRKETE
101: SIGGRAHRVP TYYNRPPQPH QPPGYLHLTS PAAPYRPPAA SGDEEDTSNP SSSGGTTKRF RTKFTAEQKE KMLAFAERLG WRIQKHDDVA VEQFCAETGV
201: RRQVLKIWMH NNKNSLGKKP

Arabidopsis Description

ATHB22homeobox protein 22 [Source:TAIR;Acc:AT4G24660]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.