Factsheet for Bra012882.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra004399.1-P
Bra007869.1-P
Bra008185.1-P
Bra008712.1-P
Bra015857.1-P
Bra024382.1-P
Bra025363.1-P
Bra025644.1-P
Bra026219.1-P
Bra026830.1-P
Bra031859.1-P
Bra037816.1-P
Bra039038.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G50890.1	Bra026219.1-P	AT1G14440.1	16428600
AT3G50890.1	Bra026830.1-P	AT1G14440.1	16428600
AT3G50890.1	Bra004399.1-P	AT1G69600.1	16428600
AT3G50890.1	Bra007869.1-P	AT1G69600.1	16428600
AT3G50890.1	Bra008185.1-P	AT1G75240.1	16428600
AT3G50890.1	Bra015857.1-P	AT1G75240.1	16428600
AT3G50890.1	Bra025363.1-P	AT3G28920.1	16428600
AT3G50890.1	Bra039038.1-P	AT3G28920.1	16428600
AT3G50890.1	Bra008712.1-P	AT5G15210.1	16428600
AT3G50890.1	Bra025644.1-P	AT5G39760.1	16428600
AT3G50890.1	Bra024382.1-P	AT5G65410.1	16428600
AT3G50890.1	Bra031859.1-P	AT5G65410.1	16428600
AT3G50890.1	Bra037816.1-P	AT5G65410.1	16428600

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX90679	Canola	nucleus	83.02	90.53
CDY28987	Canola	nucleus	79.25	85.71
AT3G50890.1	Thale cress	nucleus	65.66	69.88
Bra036852.1-P	Field mustard	nucleus	55.47	67.12
Bra031051.1-P	Field mustard	mitochondrion	15.09	45.45
Bra025688.1-P	Field mustard	mitochondrion	14.72	44.32
Bra016538.1-P	Field mustard	mitochondrion	14.34	43.18
Bra039039.1-P	Field mustard	mitochondrion	14.72	39.8
Bra015898.1-P	Field mustard	mitochondrion	13.96	39.36
Bra003791.1-P	Field mustard	mitochondrion	14.34	39.18
Bra025362.1-P	Field mustard	mitochondrion	14.72	39.0
Bra013822.1-P	Field mustard	nucleus	28.68	33.78
Bra010485.1-P	Field mustard	nucleus	26.04	32.86
Bra037816.1-P	Field mustard	nucleus	27.92	30.58
Bra006657.1-P	Field mustard	nucleus	20.38	29.67
Bra007869.1-P	Field mustard	nucleus	24.15	27.83
Zm00001d009674_P001	Maize	nucleus	24.91	27.62
TraesCS1A01G418600.1	Wheat	nucleus	23.4	27.56
Os05t0579300-01	Rice	nucleus	26.42	27.45
Bra004399.1-P	Field mustard	nucleus	23.77	27.27
Bra031859.1-P	Field mustard	nucleus	27.92	27.21
TraesCS3B01G258400.1	Wheat	nucleus	23.77	27.16
Bra008712.1-P	Field mustard	cytosol	26.79	27.0
HORVU1Hr1G091470.1	Barley	nucleus	23.77	26.81
Bra037224.1-P	Field mustard	nucleus	26.79	26.79
TraesCS3A01G226100.1	Wheat	nucleus	23.4	26.38
Os01t0635550-00	Rice	nucleus	23.02	26.29
TraesCS3D01G224100.1	Wheat	nucleus	23.4	26.27
PGSC0003DMT400009581	Potato	nucleus	27.55	25.7
Bra024382.1-P	Field mustard	nucleus	27.92	25.26
TraesCS1D01G426300.1	Wheat	nucleus	23.77	25.2
Solyc04g080490.2.1	Tomato	nucleus	27.55	25.17
TraesCS1B01G448600.1	Wheat	nucleus	23.77	25.0
Bra039038.1-P	Field mustard	nucleus	29.06	24.92
GSMUA_Achr3P31090_001	Banana	nucleus	26.42	24.73
Bra026589.1-P	Field mustard	nucleus	27.92	24.67
Bra008185.1-P	Field mustard	nucleus	27.17	24.49
Bra015857.1-P	Field mustard	nucleus	27.55	24.17
VIT_18s0001g12580.t01	Wine grape	nucleus	28.68	24.05
Bra003759.1-P	Field mustard	nucleus	26.42	23.81
Bra025644.1-P	Field mustard	nucleus	28.3	23.66
GSMUA_Achr8P27010_001	Banana	nucleus	28.3	23.36
GSMUA_Achr10P...	Banana	nucleus	23.02	23.02
Bra025363.1-P	Field mustard	nucleus	29.06	22.38
GSMUA_Achr2P23010_001	Banana	nucleus	24.53	22.34
Bra026830.1-P	Field mustard	nucleus	25.66	21.66
Bra026219.1-P	Field mustard	nucleus	25.28	21.61
GSMUA_Achr4P14910_001	Banana	nucleus	26.04	20.91
GSMUA_Achr4P07850_001	Banana	nucleus	25.66	20.54
GSMUA_Achr7P25600_001	Banana	nucleus	26.79	20.46
Bra039615.1-P	Field mustard	cytosol	13.96	20.44
OQU78488	Sorghum	plastid	26.79	19.03
GSMUA_Achr6P24230_001	Banana	nucleus	15.85	18.83
GSMUA_Achr6P27240_001	Banana	plastid	27.17	18.75
GSMUA_Achr3P19060_001	Banana	nucleus	16.98	18.75
GSMUA_Achr6P22120_001	Banana	nucleus	26.79	17.84
Bra027455.1-P	Field mustard	nucleus	19.25	17.77
KXG30914	Sorghum	nucleus	25.28	16.5
Zm00001d017784_P001	Maize	nucleus	25.66	16.31
Zm00001d051573_P001	Maize	nucleus	26.42	15.7
Os02t0706600-00	Rice	nucleus	24.91	15.46
TraesCS6B01G301000.1	Wheat	nucleus	26.42	15.18
TraesCS6A01G273700.1	Wheat	nucleus	26.42	15.05
TraesCS6D01G253700.1	Wheat	nucleus	26.42	15.05
HORVU6Hr1G069090.1	Barley	nucleus	23.4	13.45
HORVU6Hr1G069070.1	Barley	plastid	9.81	9.25

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.13	EnsemblPlantsGene:Bra012882	EnsemblPlants:Bra012882.1	EnsemblPlants:Bra012882.1-P	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:Homeodomain_ZF_HD	InterPro:IPR006456
UniProt:M4D8S2	PFAM:PD125774	PFAM:PF04770	PFscan:PS51523	PANTHER:PTHR31948	PANTHER:PTHR31948:SF9
SUPFAM:SSF46689	TIGRFAMs:TIGR01565	TIGRFAMs:TIGR01566	UniParc:UPI0002540663	InterPro:ZF_HD_homeobox_Cys/His_dimer	SEG:seg

Description

AT3G50890 (E=4e-075) AtHB28 | AtHB28 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 28); DNA binding / transcription factor

Coordinates

chrA03:+:21799351..21802715

Molecular Weight (calculated)

29875.7 Da

IEP (calculated)

10.386

GRAVY (calculated)

-0.970

Length

265 amino acids

Sequence
(BLAST)

001: MEHGGNCNAI TSTTITLKAK PNTNPDPKTK PGSDSFLIKK ENQKPRTRSN QAAKYEECQK NHAALTGGHV VDGCCEFMPG GEEVTSGALK CAACNCPRSF
101: HRKEVYGHRN STQEELISPT FYRSGNSYKA IQPRGVYPTG EIGRRTSSSS EDMKKILNQN SDGKGLMMIT RKKKRVRTKI NEGQKKKMKE FAERLGWSIQ
201: KKDEEEIDKF CRTVNLRRQV YSHVQELVNL LLSIIIGDGE KLKHQHHYKG SRVSRSRSKS SSSLR

Best Arabidopsis Sequence Match ( AT3G50890.1 )
(BLAST)

001: MELGGKCNAI TTTTMISTEV KPHTDPEPEA KPESDPSMAL FPIKKENQKP KTRVDQGAKY RECQKNHAAS TGGHVVDGCC EFMAGGEEGT LGALKCAACN
101: CHRSFHRKEV YGHRNSKQDH QLMITPAFYS SNSSYKPRVM HPTGEIGRRT SSSSEDMKKI LSHRNQNVDG KSLMMMMMRK KKRVRTKINE EQKEKMKEFA
201: ERLGWRMQKK DEEEIDKFCR MVNLRRQVFK VWMHNNKQAM KRNNSNISE

Arabidopsis Description

ZHD7ZHD7 [Source:UniProtKB/TrEMBL;Acc:A0A178VL56]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.