Factsheet for Bra025363.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra004399.1-P
Bra007869.1-P
Bra008185.1-P
Bra008712.1-P
Bra012882.1-P
Bra015857.1-P
Bra024382.1-P
Bra025644.1-P
Bra026219.1-P
Bra026830.1-P
Bra031859.1-P
Bra036852.1-P
Bra037224.1-P
Bra037816.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G28920.1	Bra026219.1-P	AT1G14440.1	16428600
AT3G28920.1	Bra026830.1-P	AT1G14440.1	16428600
AT3G28920.1	Bra004399.1-P	AT1G69600.1	16428600
AT3G28920.1	Bra007869.1-P	AT1G69600.1	16428600
AT3G28920.1	Bra008185.1-P	AT1G75240.1	16428600
AT3G28920.1	Bra015857.1-P	AT1G75240.1	16428600
AT3G28920.1	Bra037224.1-P	AT2G18350.1	16428600
AT3G28920.1	Bra012882.1-P	AT3G50890.1	16428600
AT3G28920.1	Bra036852.1-P	AT3G50890.1	16428600
AT3G28920.1	Bra008712.1-P	AT5G15210.1	16428600
AT3G28920.1	Bra025644.1-P	AT5G39760.1	16428600
AT3G28920.1	Bra024382.1-P	AT5G65410.1	16428600
AT3G28920.1	Bra031859.1-P	AT5G65410.1	16428600
AT3G28920.1	Bra037816.1-P	AT5G65410.1	16428600

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX86403	Canola	nucleus	99.71	99.71
Bra039038.1-P	Field mustard	nucleus	77.62	86.41
AT3G28920.1	Thale cress	nucleus	74.42	82.05
Bra025644.1-P	Field mustard	nucleus	62.5	67.82
Solyc02g067310.2.1	Tomato	nucleus	44.77	52.74
Bra008712.1-P	Field mustard	cytosol	40.12	52.47
KRH18475	Soybean	nucleus	49.71	51.66
KRH01172	Soybean	nucleus	49.42	50.3
PGSC0003DMT400035635	Potato	nucleus	44.48	49.84
VIT_14s0108g00750.t01	Wine grape	nucleus	51.16	49.58
Solyc02g067320.1.1	Tomato	nucleus	47.09	48.94
PGSC0003DMT400017840	Potato	nucleus	46.8	48.94
Bra006657.1-P	Field mustard	nucleus	25.87	48.9
PGSC0003DMT400034368	Potato	nucleus	48.84	48.55
Bra004399.1-P	Field mustard	nucleus	30.81	45.89
Bra025688.1-P	Field mustard	mitochondrion	11.63	45.45
Bra031051.1-P	Field mustard	mitochondrion	11.63	45.45
KRH40099	Soybean	nucleus, plastid	39.53	44.16
Bra007869.1-P	Field mustard	nucleus	29.36	43.91
Bra016538.1-P	Field mustard	mitochondrion	11.05	43.18
Bra015898.1-P	Field mustard	mitochondrion	10.76	39.36
Bra003791.1-P	Field mustard	mitochondrion	11.05	39.18
Bra036852.1-P	Field mustard	nucleus	24.42	38.36
Bra039039.1-P	Field mustard	mitochondrion	10.76	37.76
Bra013822.1-P	Field mustard	nucleus	24.13	36.89
Bra025362.1-P	Field mustard	mitochondrion	10.47	36.0
Bra037816.1-P	Field mustard	nucleus	25.29	35.95
Bra010485.1-P	Field mustard	nucleus	21.8	35.71
Bra031859.1-P	Field mustard	nucleus	26.74	33.82
Bra024382.1-P	Field mustard	nucleus	26.45	31.06
Bra012882.1-P	Field mustard	nucleus	22.38	29.06
Bra003759.1-P	Field mustard	nucleus	24.71	28.91
Bra008185.1-P	Field mustard	nucleus	24.42	28.57
Bra015857.1-P	Field mustard	nucleus	24.71	28.15
Bra026589.1-P	Field mustard	nucleus	24.42	28.0
Bra026830.1-P	Field mustard	nucleus	24.42	26.75
Bra037224.1-P	Field mustard	nucleus	20.35	26.42
Bra026219.1-P	Field mustard	nucleus	23.55	26.13
Bra039615.1-P	Field mustard	cytosol	11.05	20.99
Bra027455.1-P	Field mustard	nucleus	17.44	20.91

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.13	EnsemblPlantsGene:Bra025363	EnsemblPlants:Bra025363.1	EnsemblPlants:Bra025363.1-P	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:Homeodomain_ZF_HD	InterPro:IPR006456
UniProt:M4E9A7	PFAM:PD125774	PFAM:PF04770	PFscan:PS51523	PANTHER:PTHR31948	PANTHER:PTHR31948:SF29
SUPFAM:SSF46689	TIGRFAMs:TIGR01565	TIGRFAMs:TIGR01566	UniParc:UPI000253FAEE	InterPro:ZF_HD_homeobox_Cys/His_dimer	SEG:seg

Description

AT5G39760 (E=1e-063) AtHB23 | AtHB23 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 23); DNA binding / transcription factor

Coordinates

chrA06:+:21940766..21941800

Molecular Weight (calculated)

37245.1 Da

IEP (calculated)

8.432

GRAVY (calculated)

-0.894

Length

344 amino acids

Sequence
(BLAST)

001: MLEVGAMEMT PKSPEPESET PTRIQPAKPI SFSNGIIKRH HHIHHHTLTV TYKECLKNHA AAIGGHALDG CGEFMPSPSS TPSDPTSLKC AACGCHRNFH
101: RRDPDDSSLA SAVPPPSLPP SSTTAAIEYQ PHHRHHPPPP APPLPRSPTS SSPPPISSSY MLLALSGNNK PGGNSLPFSD LNFAANNLST HHHHHNHNHH
201: TPGSRKRFRT KFSQTQKDKM HEFADRIGWK IQKRDEGEVR DFCRDVGVDK GVLKVWMHNN KNTFNTRRDQ PFSGDTTVQK IDNGVAVSGG KNINNNNNNN
301: NNNNAVDVGV HGGNGLEHDL HGGDGGRFES DSGGAAANGS SSTS

Best Arabidopsis Sequence Match ( AT3G28920.1 )
(BLAST)

001: MLEVRSMDMT PKSPEPESET PTRIQPAKPI SFSNGIIKRH HHHHHNNNKV TYKECLKNHA AAIGGHALDG CGEFMPSPSS TPSDPTSLKC AACGCHRNFH
101: RRETDDSSAV PPPSLLPSST TTAAIEYQPH HRHHPPPPLA PPLPRSPNSS SPPPISSSYM LLALSGNNKT APFSDLNFAA AANHLSATPG SRKRFRTKFS
201: SNQKEKMHEF ADRIGWKIQK RDEDEVRDFC REIGVDKGVL KVWMHNNKNS FKFSGGGATT VQRNDNGIGG ENSNDDGVRG LANDGDGGGG RFESDSGGAD
301: GGGNVNASSS SS

Arabidopsis Description

ZHD9Zinc-finger homeodomain protein 9 [Source:UniProtKB/Swiss-Prot;Acc:Q9LHF0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.