Skip to main content
crop-pal logo
Field mustard
Search for another protein from :
Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 2
  • plastid 1
  • mitochondrion 1
  • cytosol 2
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:nucleus
iPSORT:plastid
MultiLoc:nucleus
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
Bra003335.1-P
Bra004399.1-P
Bra007869.1-P
Bra008185.1-P
Bra008712.1-P
Bra012882.1-P
Bra015857.1-P
Bra024382.1-P
Bra025363.1-P
Bra025644.1-P
Bra026219.1-P
Bra026830.1-P
Bra028528.1-P
Bra030807.1-P
Bra031859.1-P
Bra036852.1-P
Bra037816.1-P
Bra039038.1-P

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G15210.1 Bra026219.1-P AT1G14440.1 16428600
AT5G15210.1 Bra026830.1-P AT1G14440.1 16428600
AT5G15210.1 Bra003335.1-P AT1G54330.1 21245844
AT5G15210.1 Bra030807.1-P AT1G54330.1 21245844
AT5G15210.1 Bra004399.1-P AT1G69600.1 16428600
AT5G15210.1 Bra007869.1-P AT1G69600.1 16428600
AT5G15210.1 Bra008185.1-P AT1G75240.1 16428600
AT5G15210.1 Bra015857.1-P AT1G75240.1 16428600
AT5G15210.1 Bra028528.1-P AT2G18196.1 18974936
AT5G15210.1 Bra025363.1-P AT3G28920.1 16428600
AT5G15210.1 Bra039038.1-P AT3G28920.1 16428600
AT5G15210.1 Bra012882.1-P AT3G50890.1 16428600
AT5G15210.1 Bra036852.1-P AT3G50890.1 16428600
AT5G15210.1 Bra008712.1-P AT5G15210.1 16428600
AT5G15210.1 Bra008712.1-P AT5G15210.1 21245844
AT5G15210.1 Bra025644.1-P AT5G39760.1 16428600
AT5G15210.1 Bra025644.1-P AT5G39760.1 21245844
AT5G15210.1 Bra024382.1-P AT5G65410.1 16428600
AT5G15210.1 Bra031859.1-P AT5G65410.1 16428600
AT5G15210.1 Bra037816.1-P AT5G65410.1 16428600
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX69541 Canola nucleus 99.24 99.24
CDX85059 Canola nucleus 87.83 97.06
AT5G15210.1 Thale cress nucleus 79.09 76.75
Bra006657.1-P Field mustard nucleus 36.12 52.2
Os09t0414600-02 Rice nucleus 19.77 47.71
Bra039038.1-P Field mustard nucleus 52.85 44.98
Bra025644.1-P Field mustard nucleus 53.99 44.8
GSMUA_Achr6P02700_001 Banana nucleus 38.78 42.86
Bra031051.1-P Field mustard mitochondrion 14.07 42.05
Bra025688.1-P Field mustard mitochondrion 14.07 42.05
Bra016538.1-P Field mustard mitochondrion 14.07 42.05
Bra004399.1-P Field mustard nucleus 36.12 41.13
Bra025363.1-P Field mustard nucleus 52.47 40.12
PGSC0003DMT400080288 Potato nucleus 43.35 39.72
Bra007869.1-P Field mustard nucleus 34.6 39.57
KRH74865 Soybean nucleus 44.49 39.53
KRH70724 Soybean nucleus 43.35 39.18
VIT_01s0026g02460.t01 Wine grape nucleus 33.46 38.26
GSMUA_Achr10P... Banana nucleus 37.64 37.93
Solyc05g007580.1.1 Tomato nucleus 42.59 37.71
Bra036852.1-P Field mustard nucleus 30.42 36.53
Bra015898.1-P Field mustard mitochondrion 12.93 36.17
Bra003791.1-P Field mustard mitochondrion 13.31 36.08
Bra010485.1-P Field mustard nucleus 28.52 35.71
Bra039039.1-P Field mustard mitochondrion 13.31 35.71
Bra013822.1-P Field mustard nucleus 29.28 34.22
KRG89637 Soybean nucleus 23.57 34.07
Bra025362.1-P Field mustard mitochondrion 12.93 34.0
Bra037816.1-P Field mustard nucleus 30.04 32.64
TraesCS3A01G308700.1 Wheat nucleus 22.43 31.89
Os08t0438400-01 Rice plastid 40.3 31.36
Bra031859.1-P Field mustard nucleus 32.32 31.25
KRH50585 Soybean nucleus 41.83 30.73
HORVU1Hr1G013140.1 Barley cytosol 8.75 30.67
TraesCS1D01G064300.1 Wheat mitochondrion 19.77 30.06
Bra024382.1-P Field mustard nucleus 31.56 28.33
Zm00001d005757_P001 Maize nucleus 38.4 27.98
Zm00001d020460_P001 Maize nucleus 39.16 27.84
Zm00001d032175_P001 Maize cytosol 39.16 27.61
Zm00001d050443_P001 Maize nucleus 38.02 27.32
Bra026589.1-P Field mustard nucleus 30.8 27.0
Bra012882.1-P Field mustard nucleus 27.0 26.79
Bra037224.1-P Field mustard nucleus 27.0 26.79
KXG35632 Sorghum nucleus 38.78 26.77
Bra026219.1-P Field mustard nucleus 31.18 26.45
Bra026830.1-P Field mustard nucleus 31.56 26.43
Bra003759.1-P Field mustard nucleus 29.28 26.19
EES15050 Sorghum cytosol 38.78 26.15
Bra008185.1-P Field mustard nucleus 28.9 25.85
Bra015857.1-P Field mustard nucleus 29.28 25.5
HORVU5Hr1G065740.1 Barley nucleus 37.26 25.39
TraesCS5A01G227100.1 Wheat nucleus 36.5 25.07
OQU86730 Sorghum nucleus 25.1 24.91
TraesCS5D01G234600.1 Wheat nucleus 36.5 24.81
TraesCS5B01G225700.1 Wheat nucleus 36.5 24.62
TraesCS1B01G106800.1 Wheat nucleus 26.62 24.14
TraesCS1A01G087700.1 Wheat nucleus 25.86 23.78
Bra027455.1-P Field mustard nucleus 23.19 21.25
Bra039615.1-P Field mustard cytosol 12.17 17.68
Protein Annotations
Gene3D:1.10.10.60MapMan:15.5.3.13EnsemblPlantsGene:Bra008712EnsemblPlants:Bra008712.1EnsemblPlants:Bra008712.1-PGO:GO:0003674
GO:GO:0003676GO:GO:0003677GO:GO:0005488GO:GO:0008150GO:GO:0008152GO:GO:0009987
GO:GO:0019748GO:GO:0019760GO:GO:0043565GO:GO:0044212InterPro:Homeobox-like_sfInterPro:Homeodomain_ZF_HD
InterPro:IPR006456UniProt:M4CWW5PFAM:PD125774PFAM:PF04770PFscan:PS51523PANTHER:PTHR31948
PANTHER:PTHR31948:SF29SUPFAM:SSF46689TIGRFAMs:TIGR01565TIGRFAMs:TIGR01566UniParc:UPI0002544FC8InterPro:ZF_HD_homeobox_Cys/His_dimer
SEG:seg:::::
Description
AT5G15210 (E=3e-084) ATHB30, ZFHD3 | ATHB30 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 30); DNA binding / transcription factor
Coordinates
chrA10:+:13513614..13514405
Molecular Weight (calculated)
28579.5 Da
IEP (calculated)
7.937
GRAVY (calculated)
-0.584
Length
263 amino acids
Sequence
(BLAST)
001: MDVIATSATI VSHLDSQQPM TQAPTRIQPA KPISFSNGKH HHDHQHHASQ VVVAAYKECL KNHAAGIGGH ALDGCGEFIP SPTFNTSDPT SLTCDACGCH
101: RNFHRREDDL SAVSAAVPRI EFRPHNRHQL PPPPLPPVGV GSQDDDDPAS PPPISSSYML LALSGRATAA PVSRKRFRTK FSEFQKGKMF EFAERVGWRM
201: PKADDVDVVE FCREIGVERS VFKVWMHNNK TPGRGGGARR ANGDGGVGDD RENVPTNGSF AST
Best Arabidopsis Sequence Match ( AT5G15210.1 )
(BLAST)
001: MDVIATTTTI VSDLDSRQPE IEAPIRIQPA KPISFSNGKR CHHHHLASEA VAVATYKECL KNHAAGIGGH ALDGCGEFMP SPSFNSNDPA SLTCAACGCH
101: RNFHRREEDP SSLSAIVPAI EFRPHNRHQL PPPPPPHLAG IRSPDDDDSA SPPPISSSYM LLALSGGRGG ANTAVPMSRK RFRTKFSQYQ KEKMFEFSER
201: VGWRMPKADD VVVKEFCREI GVDKSVFKVW MHNNKISGRS GARRANGGVV VGGVGDSRQS VVPTNGSFSS T
Arabidopsis Description
ZHD8Zinc-finger homeodomain protein 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXG0]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.