Factsheet for Bra039038.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra004399.1-P
Bra007869.1-P
Bra008185.1-P
Bra008712.1-P
Bra012882.1-P
Bra015857.1-P
Bra024382.1-P
Bra025644.1-P
Bra026219.1-P
Bra026830.1-P
Bra031859.1-P
Bra036852.1-P
Bra037224.1-P
Bra037816.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G28920.1	Bra026219.1-P	AT1G14440.1	16428600
AT3G28920.1	Bra026830.1-P	AT1G14440.1	16428600
AT3G28920.1	Bra004399.1-P	AT1G69600.1	16428600
AT3G28920.1	Bra007869.1-P	AT1G69600.1	16428600
AT3G28920.1	Bra008185.1-P	AT1G75240.1	16428600
AT3G28920.1	Bra015857.1-P	AT1G75240.1	16428600
AT3G28920.1	Bra037224.1-P	AT2G18350.1	16428600
AT3G28920.1	Bra012882.1-P	AT3G50890.1	16428600
AT3G28920.1	Bra036852.1-P	AT3G50890.1	16428600
AT3G28920.1	Bra008712.1-P	AT5G15210.1	16428600
AT3G28920.1	Bra025644.1-P	AT5G39760.1	16428600
AT3G28920.1	Bra024382.1-P	AT5G65410.1	16428600
AT3G28920.1	Bra031859.1-P	AT5G65410.1	16428600
AT3G28920.1	Bra037816.1-P	AT5G65410.1	16428600

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY20008	Canola	nucleus	89.32	98.22
CDY00104	Canola	nucleus	97.41	96.47
Bra025363.1-P	Field mustard	nucleus	86.41	77.62
AT3G28920.1	Thale cress	nucleus	75.4	74.68
Bra025644.1-P	Field mustard	nucleus	65.7	64.04
Bra008712.1-P	Field mustard	cytosol	44.98	52.85
Solyc02g067310.2.1	Tomato	nucleus	49.84	52.74
KRH18475	Soybean	nucleus	54.37	50.76
KRH01172	Soybean	nucleus	55.34	50.59
PGSC0003DMT400035635	Potato	nucleus	49.19	49.51
Bra006657.1-P	Field mustard	nucleus	29.13	49.45
PGSC0003DMT400017840	Potato	nucleus	51.46	48.33
Solyc02g067320.1.1	Tomato	nucleus	51.46	48.04
PGSC0003DMT400034368	Potato	nucleus	53.72	47.98
VIT_14s0108g00750.t01	Wine grape	nucleus	53.72	46.76
Bra031051.1-P	Field mustard	mitochondrion	13.27	46.59
Bra025688.1-P	Field mustard	mitochondrion	13.27	46.59
Bra004399.1-P	Field mustard	nucleus	34.63	46.32
Bra007869.1-P	Field mustard	nucleus	33.01	44.35
Bra016538.1-P	Field mustard	mitochondrion	12.62	44.32
KRH40099	Soybean	nucleus, plastid	44.01	44.16
Bra015898.1-P	Field mustard	mitochondrion	11.97	39.36
Bra003791.1-P	Field mustard	mitochondrion	12.3	39.18
Bra039039.1-P	Field mustard	mitochondrion	12.3	38.78
Bra036852.1-P	Field mustard	nucleus	26.86	37.9
Bra013822.1-P	Field mustard	nucleus	27.51	37.78
Bra010485.1-P	Field mustard	nucleus	25.24	37.14
Bra025362.1-P	Field mustard	mitochondrion	11.97	37.0
Bra037816.1-P	Field mustard	nucleus	28.16	35.95
Bra031859.1-P	Field mustard	nucleus	30.42	34.56
Bra024382.1-P	Field mustard	nucleus	29.77	31.4
Bra003759.1-P	Field mustard	nucleus	28.16	29.59
Bra012882.1-P	Field mustard	nucleus	24.92	29.06
Bra015857.1-P	Field mustard	nucleus	28.16	28.81
Bra026589.1-P	Field mustard	nucleus	27.83	28.67
Bra008185.1-P	Field mustard	nucleus	26.54	27.89
Bra026830.1-P	Field mustard	nucleus	27.83	27.39
Bra026219.1-P	Field mustard	nucleus	26.86	26.77
Bra037224.1-P	Field mustard	nucleus	22.65	26.42
Bra027455.1-P	Field mustard	nucleus	19.74	21.25
Bra039615.1-P	Field mustard	cytosol	12.3	20.99

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.13	EnsemblPlantsGene:Bra039038	EnsemblPlants:Bra039038.1	EnsemblPlants:Bra039038.1-P	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:Homeodomain_ZF_HD	InterPro:IPR006456
UniProt:M4FD68	PFAM:PD125774	PFAM:PF04770	PFscan:PS51523	PANTHER:PTHR31948	PANTHER:PTHR31948:SF29
SUPFAM:SSF46689	TIGRFAMs:TIGR01565	TIGRFAMs:TIGR01566	UniParc:UPI0002541C15	InterPro:ZF_HD_homeobox_Cys/His_dimer	SEG:seg

Description

AT3G28920 (E=6e-082) AtHB34 | AtHB34 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 34); DNA binding / transcription factor

Coordinates

chrA09:-:1492759..1493688

Molecular Weight (calculated)

33424.8 Da

IEP (calculated)

7.933

GRAVY (calculated)

-0.853

Length

309 amino acids

Sequence
(BLAST)

001: MDMTLKSPEP EPETPTRIQP AKPISFSNGI TKRHHHPIAV TYKECLKNHA AAIGGHALDG CGEFMPSPSS TPSDPTSLKC AACGCHRNFH RRDPEDSSLT
101: SAVPPPSLPP SSTLEYQPHH RHHPPPPGPH LPRSPTSSSP PPISSSYMLL ALSGTNKPGG NSLPFSDLNF AANNLSTHHL TPGSRKRFRT KFSQAQKEKM
201: HEFADRIGWK FQKRDEDDVR DFCREVGVDK GVLKVWMHNN KNTFNNRRDQ PVAGGTTVHC VDNGVAVNNA EDDGVHGGNG LEHNLHGDGA EGVNANGSSS
301: SSGKSNNEA

Best Arabidopsis Sequence Match ( AT3G28920.1 )
(BLAST)

001: MLEVRSMDMT PKSPEPESET PTRIQPAKPI SFSNGIIKRH HHHHHNNNKV TYKECLKNHA AAIGGHALDG CGEFMPSPSS TPSDPTSLKC AACGCHRNFH
101: RRETDDSSAV PPPSLLPSST TTAAIEYQPH HRHHPPPPLA PPLPRSPNSS SPPPISSSYM LLALSGNNKT APFSDLNFAA AANHLSATPG SRKRFRTKFS
201: SNQKEKMHEF ADRIGWKIQK RDEDEVRDFC REIGVDKGVL KVWMHNNKNS FKFSGGGATT VQRNDNGIGG ENSNDDGVRG LANDGDGGGG RFESDSGGAD
301: GGGNVNASSS SS

Arabidopsis Description

ZHD9Zinc-finger homeodomain protein 9 [Source:UniProtKB/Swiss-Prot;Acc:Q9LHF0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.