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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 5
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:mitochondrion, nucleus
BaCelLo:nucleus
MultiLoc:nucleus
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
Bra004399.1-P
Bra007869.1-P
Bra024382.1-P
Bra025363.1-P
Bra025644.1-P
Bra026219.1-P
Bra026830.1-P
Bra031859.1-P
Bra037816.1-P
Bra039038.1-P

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT2G18350.1 Bra026219.1-P AT1G14440.1 16428600
AT2G18350.1 Bra026830.1-P AT1G14440.1 16428600
AT2G18350.1 Bra004399.1-P AT1G69600.1 16428600
AT2G18350.1 Bra007869.1-P AT1G69600.1 16428600
AT2G18350.1 Bra025363.1-P AT3G28920.1 16428600
AT2G18350.1 Bra039038.1-P AT3G28920.1 16428600
AT2G18350.1 Bra025644.1-P AT5G39760.1 16428600
AT2G18350.1 Bra024382.1-P AT5G65410.1 16428600
AT2G18350.1 Bra031859.1-P AT5G65410.1 16428600
AT2G18350.1 Bra037816.1-P AT5G65410.1 16428600
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY70550 Canola nucleus 94.72 97.67
CDY70108 Canola nucleus 95.09 95.09
AT2G18350.1 Thale cress nucleus 81.89 82.82
Bra039615.1-P Field mustard cytosol 49.06 71.82
Bra031051.1-P Field mustard mitochondrion 15.85 47.73
Bra025688.1-P Field mustard mitochondrion 15.47 46.59
Bra016538.1-P Field mustard mitochondrion 15.09 45.45
Bra025362.1-P Field mustard mitochondrion 16.98 45.0
Bra039039.1-P Field mustard mitochondrion 16.6 44.9
Bra015898.1-P Field mustard mitochondrion 15.47 43.62
Bra003791.1-P Field mustard mitochondrion 15.85 43.3
Bra010485.1-P Field mustard nucleus 30.94 39.05
Bra036852.1-P Field mustard nucleus 31.7 38.36
Bra013822.1-P Field mustard nucleus 31.32 36.89
Bra008185.1-P Field mustard nucleus 38.11 34.35
Bra015857.1-P Field mustard nucleus 38.11 33.44
Bra003759.1-P Field mustard nucleus 36.98 33.33
PGSC0003DMT400009581 Potato nucleus 35.47 33.1
TraesCS1A01G418600.1 Wheat nucleus 27.92 32.89
Bra006657.1-P Field mustard nucleus 22.26 32.42
Solyc04g080490.2.1 Tomato nucleus 35.47 32.41
HORVU1Hr1G091470.1 Barley nucleus 28.68 32.34
Zm00001d009674_P001 Maize nucleus 28.68 31.8
Os01t0635550-00 Rice nucleus 27.55 31.47
TraesCS3B01G258400.1 Wheat nucleus 27.17 31.03
Bra037816.1-P Field mustard nucleus 28.3 30.99
Os05t0579300-01 Rice nucleus 29.43 30.59
TraesCS3A01G226100.1 Wheat nucleus 26.79 30.21
TraesCS3D01G224100.1 Wheat nucleus 26.79 30.08
TraesCS1D01G426300.1 Wheat nucleus 28.3 30.0
TraesCS1B01G448600.1 Wheat nucleus 28.3 29.76
VIT_18s0001g12580.t01 Wine grape nucleus 35.47 29.75
Bra031859.1-P Field mustard nucleus 29.81 29.04
GSMUA_Achr3P31090_001 Banana nucleus 30.57 28.62
Bra026589.1-P Field mustard nucleus 32.08 28.33
Bra026830.1-P Field mustard nucleus 33.21 28.03
GSMUA_Achr10P... Banana nucleus 27.92 27.92
Bra007869.1-P Field mustard nucleus 24.15 27.83
Bra026219.1-P Field mustard nucleus 32.45 27.74
Bra004399.1-P Field mustard nucleus 24.15 27.71
Bra008712.1-P Field mustard cytosol 26.79 27.0
Bra024382.1-P Field mustard nucleus 29.81 26.96
GSMUA_Achr2P23010_001 Banana nucleus 29.43 26.8
Bra012882.1-P Field mustard nucleus 26.79 26.79
GSMUA_Achr7P25600_001 Banana nucleus 32.83 25.07
GSMUA_Achr8P27010_001 Banana nucleus 30.19 24.92
GSMUA_Achr4P14910_001 Banana nucleus 30.57 24.55
GSMUA_Achr4P07850_001 Banana nucleus 30.19 24.17
Bra039038.1-P Field mustard nucleus 26.42 22.65
Bra027455.1-P Field mustard nucleus 24.15 22.3
Bra025644.1-P Field mustard nucleus 25.66 21.45
OQU78488 Sorghum plastid 29.43 20.91
GSMUA_Achr6P22120_001 Banana nucleus 30.94 20.6
Bra025363.1-P Field mustard nucleus 26.42 20.35
GSMUA_Achr6P27240_001 Banana plastid 29.06 20.05
GSMUA_Achr6P24230_001 Banana nucleus 16.23 19.28
KXG30914 Sorghum nucleus 29.43 19.21
Os02t0706600-00 Rice nucleus 30.57 18.97
Zm00001d017784_P001 Maize nucleus 29.43 18.7
GSMUA_Achr3P19060_001 Banana nucleus 16.23 17.92
TraesCS6B01G301000.1 Wheat nucleus 30.94 17.79
Zm00001d051573_P001 Maize nucleus 29.81 17.71
TraesCS6D01G253700.1 Wheat nucleus 30.94 17.63
TraesCS6A01G273700.1 Wheat nucleus 30.94 17.63
HORVU6Hr1G069090.1 Barley nucleus 28.68 16.49
HORVU6Hr1G069070.1 Barley plastid 10.94 10.32
Protein Annotations
Gene3D:1.10.10.60MapMan:15.5.3.13EnsemblPlantsGene:Bra037224EnsemblPlants:Bra037224.1EnsemblPlants:Bra037224.1-PGO:GO:0003674
GO:GO:0003676GO:GO:0003677GO:GO:0005488InterPro:Homeobox-like_sfInterPro:Homeodomain_ZF_HDInterPro:IPR006456
UniProt:M4F813PFAM:PD125774PFAM:PF04770PFscan:PS51523PANTHER:PTHR31948PANTHER:PTHR31948:SF9
SUPFAM:SSF46689TIGRFAMs:TIGR01565TIGRFAMs:TIGR01566UniParc:UPI0002541ED7InterPro:ZF_HD_homeobox_Cys/His_dimerSEG:seg
Description
AT2G18350 (E=2e-117) AtHB24 | AtHB24 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 24); DNA binding / transcription factor
Coordinates
chrA09:-:4908338..4909135
Molecular Weight (calculated)
30466.5 Da
IEP (calculated)
9.767
GRAVY (calculated)
-1.161
Length
265 amino acids
Sequence
(BLAST)
001: MEVREKKDNK IEMERRQSSA NQNIQDPRLP PYTYSQTADK EKPTTKRNGS DRDPDLDTNP TSIAPAPRSY ARPQTTSPTR RVSYRECQRN HAASSGGHVV
101: DGWGEFMSSG EEGTAESLLC AACDCHRSFH RKEVDGMFVV KFNSFGHSQR PLVNRHVSPI MMSFGGGGGG RDPAESSTED LNRFHQALSG NGVDQFQYHP
201: KKRFRTKFNQ EQKERMFEFA EKIGWRMNKS EDEEVNRFCR EINVKRQVFK VWMHNNKQAA KKKET
Best Arabidopsis Sequence Match ( AT2G18350.1 )
(BLAST)
001: MEVREKKDEK MEMTRRKSSA LDHHRLPPYT YSQTANKEKP TTKRNGSDPD PDPDLDTNPI SISHAPRSYA RPQTTSPGKA RYRECQKNHA ASSGGHVVDG
101: CGEFMSSGEE GTVESLLCAA CDCHRSFHRK EIDGLFVVNF NSFGHSQRPL GSRHVSPIMM SFGGGGGCAA ESSTEDLNKF HQSFSGYGVD QFHHYQPKKR
201: FRTKFNEEQK EKMMEFAEKI GWRMTKLEDD EVNRFCREIK VKRQVFKVWM HNNKQAAKKK DL
Arabidopsis Description
ZHD6Zinc-finger homeodomain protein 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZPW7]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.