Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6B01G301000.1 | Wheat | nucleus | 95.05 | 95.88 |
| TraesCS6A01G273700.1 | Wheat | nucleus | 93.98 | 93.98 |
| HORVU6Hr1G069090.1 | Barley | nucleus | 83.01 | 83.73 |
| Os02t0706600-00 | Rice | nucleus | 62.58 | 68.15 |
| Zm00001d017784_P001 | Maize | nucleus | 57.42 | 64.03 |
| KXG30914 | Sorghum | nucleus | 54.41 | 62.32 |
| Zm00001d051573_P001 | Maize | nucleus | 58.49 | 60.99 |
| TraesCS3D01G224100.1 | Wheat | nucleus | 22.8 | 44.92 |
| TraesCS1D01G426300.1 | Wheat | nucleus | 23.87 | 44.4 |
| GSMUA_Achr10P... | Banana | nucleus | 23.66 | 41.51 |
| GSMUA_Achr2P23010_001 | Banana | nucleus | 25.81 | 41.24 |
| TraesCS5D01G149400.1 | Wheat | cytosol | 7.96 | 39.36 |
| TraesCS5D01G234700.1 | Wheat | mitochondrion | 7.74 | 38.71 |
| TraesCS5D01G253100.1 | Wheat | nucleus | 22.58 | 35.47 |
| CDX73775 | Canola | nucleus | 15.91 | 34.42 |
| Bra036852.1-P | Field mustard | nucleus | 16.13 | 34.25 |
| CDX77960 | Canola | nucleus | 16.13 | 34.25 |
| CDY37252 | Canola | nucleus | 18.71 | 33.33 |
| CDY62531 | Canola | nucleus | 18.71 | 33.08 |
| CDX90679 | Canola | nucleus | 17.2 | 32.92 |
| VIT_18s0001g12580.t01 | Wine grape | nucleus | 22.37 | 32.91 |
| AT3G50890.1 | Thale cress | nucleus | 17.42 | 32.53 |
| CDY28987 | Canola | nucleus | 16.99 | 32.24 |
| PGSC0003DMT400009581 | Potato | nucleus | 19.57 | 32.04 |
| CDY70550 | Canola | nucleus | 17.63 | 31.91 |
| TraesCS1D01G064300.1 | Wheat | mitochondrion | 11.61 | 31.21 |
| CDY70108 | Canola | nucleus | 17.63 | 30.94 |
| Bra037224.1-P | Field mustard | nucleus | 17.63 | 30.94 |
| CDY45419 | Canola | nucleus | 19.14 | 30.9 |
| Solyc04g080490.2.1 | Tomato | nucleus | 18.92 | 30.34 |
| Bra008185.1-P | Field mustard | nucleus | 19.14 | 30.27 |
| AT2G18350.1 | Thale cress | nucleus | 16.99 | 30.15 |
| TraesCS2D01G303900.1 | Wheat | nucleus | 18.92 | 30.03 |
| KRH76785 | Soybean | nucleus | 20.43 | 29.97 |
| CDY71124 | Canola | nucleus | 16.56 | 29.96 |
| KRH69909 | Soybean | nucleus | 21.51 | 29.94 |
| CDX73152 | Canola | nucleus | 19.14 | 29.77 |
| KRH08258 | Soybean | nucleus | 20.86 | 29.48 |
| Bra015857.1-P | Field mustard | nucleus | 19.14 | 29.47 |
| KRH28682 | Soybean | nucleus | 20.86 | 28.87 |
| Solyc02g085160.1.1 | Tomato | nucleus | 17.85 | 28.33 |
| CDX85886 | Canola | nucleus | 17.85 | 28.23 |
| CDX68137 | Canola | nucleus | 17.85 | 27.95 |
| Bra003759.1-P | Field mustard | nucleus | 17.63 | 27.89 |
| AT1G75240.1 | Thale cress | nucleus | 18.49 | 27.83 |
| PGSC0003DMT400009033 | Potato | nucleus | 17.85 | 27.48 |
| Bra012882.1-P | Field mustard | nucleus | 15.05 | 26.42 |
| TraesCS4D01G086300.1 | Wheat | nucleus | 21.94 | 26.22 |
| TraesCS5D01G234600.1 | Wheat | nucleus | 18.28 | 21.96 |
| VIT_04s0023g01880.t01 | Wine grape | nucleus | 18.49 | 19.86 |
Protein Annotations
| EnsemblPlants:TraesCS6D01G253700.1 | EnsemblPlantsGene:TraesCS6D01G253700 | Gene3D:1.10.10.60 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:Homeodomain_ZF_HD | InterPro:IPR006456 | InterPro:ZF_HD_homeobox_Cys/His_dimer | ncoils:Coil |
| PANTHER:PTHR31948 | PANTHER:PTHR31948:SF11 | PFAM:PD125774 | PFAM:PF04770 | PFscan:PS51523 | SEG:seg |
| SUPFAM:SSF46689 | TIGRFAMs:TIGR01565 | TIGRFAMs:TIGR01566 | MapMan:15.5.3.13 | : | : |
Description
No Description!
Coordinates
chr6D:-:357591784..357593314
Molecular Weight (calculated)
50603.2 Da
IEP (calculated)
7.142
GRAVY (calculated)
-0.962
Length
465 amino acids
Sequence
(BLAST)
(BLAST)
001: MEYKRSSHVE EDEELEEEEE EEEDDEEEEE EEDEEGAMRD RRHQHQHPHH HRHHYTTAPA TAAPPLHLHM QGQAPQVLGS PAAAASSPSS LMEAAAFSRP
101: LLPPNSSLVS SPPPPPQAPP GFLLPQHQHP HRRRVDRERE KERTVEAPGE AHRQQQQPQP QHQRHQEPQP QRHQEPARNG VLGGGAMPPP PPTLAIVTGG
201: ATRAAGEHGG ASGPEPLPWR YRECLRNHAA RMGAHVLDGC GEFMPSPGDG PAALACAACG CHRSFHRREP VVVVPSPSPS PASAVVSPSA TPAGANSRLM
301: PLLLAPPHMQ QKRPHVPASP MSAPAALAES SSEELRAPPP PPPPPHSQAQ AAAGGSASAP PAPSKKRFRT KFTPEQKERM LEFAHRVGWR VQKPDGGVVD
401: AFCAQVGVPR RVLKVWMHNN KHLAKTPATS PQPLPPLHHD PSPPPHHQHQ HHPAPPHHQQ QQHGA
101: LLPPNSSLVS SPPPPPQAPP GFLLPQHQHP HRRRVDRERE KERTVEAPGE AHRQQQQPQP QHQRHQEPQP QRHQEPARNG VLGGGAMPPP PPTLAIVTGG
201: ATRAAGEHGG ASGPEPLPWR YRECLRNHAA RMGAHVLDGC GEFMPSPGDG PAALACAACG CHRSFHRREP VVVVPSPSPS PASAVVSPSA TPAGANSRLM
301: PLLLAPPHMQ QKRPHVPASP MSAPAALAES SSEELRAPPP PPPPPHSQAQ AAAGGSASAP PAPSKKRFRT KFTPEQKERM LEFAHRVGWR VQKPDGGVVD
401: AFCAQVGVPR RVLKVWMHNN KHLAKTPATS PQPLPPLHHD PSPPPHHQHQ HHPAPPHHQQ QQHGA
001: MDVIATTTTI VSDLDSRQPE IEAPIRIQPA KPISFSNGKR CHHHHLASEA VAVATYKECL KNHAAGIGGH ALDGCGEFMP SPSFNSNDPA SLTCAACGCH
101: RNFHRREEDP SSLSAIVPAI EFRPHNRHQL PPPPPPHLAG IRSPDDDDSA SPPPISSSYM LLALSGGRGG ANTAVPMSRK RFRTKFSQYQ KEKMFEFSER
201: VGWRMPKADD VVVKEFCREI GVDKSVFKVW MHNNKISGRS GARRANGGVV VGGVGDSRQS VVPTNGSFSS T
101: RNFHRREEDP SSLSAIVPAI EFRPHNRHQL PPPPPPHLAG IRSPDDDDSA SPPPISSSYM LLALSGGRGG ANTAVPMSRK RFRTKFSQYQ KEKMFEFSER
201: VGWRMPKADD VVVKEFCREI GVDKSVFKVW MHNNKISGRS GARRANGGVV VGGVGDSRQS VVPTNGSFSS T
Arabidopsis Description
ZHD8Zinc-finger homeodomain protein 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXG0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.