Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G253100.1 | Wheat | nucleus | 98.99 | 99.32 |
| TraesCS5A01G246500.1 | Wheat | nucleus | 96.97 | 96.97 |
| HORVU5Hr1G069730.1 | Barley | nucleus | 95.62 | 94.04 |
| Os09t0466400-01 | Rice | nucleus | 81.14 | 86.38 |
| Zm00001d020774_P001 | Maize | nucleus | 72.05 | 78.39 |
| EER96888 | Sorghum | nucleus | 76.09 | 74.83 |
| Zm00001d005931_P001 | Maize | nucleus | 66.33 | 68.88 |
| VIT_18s0001g07140.t01 | Wine grape | nucleus | 52.53 | 67.83 |
| GSMUA_Achr5P05500_001 | Banana | nucleus | 51.18 | 63.87 |
| VIT_00s0199g00250.t01 | Wine grape | nucleus | 49.49 | 60.25 |
| Solyc04g074990.2.1 | Tomato | nucleus | 28.28 | 58.74 |
| GSMUA_AchrUn_... | Banana | nucleus | 49.16 | 58.4 |
| Solyc05g051420.1.1 | Tomato | nucleus | 32.32 | 57.48 |
| KRH45571 | Soybean | cytosol, nucleus | 37.71 | 57.44 |
| PGSC0003DMT400084919 | Potato | nucleus | 33.33 | 56.57 |
| KRG99446 | Soybean | nucleus | 46.8 | 55.6 |
| KRH74513 | Soybean | nucleus | 47.47 | 55.51 |
| KRH45572 | Soybean | nucleus | 36.7 | 55.05 |
| KRH45573 | Soybean | nucleus | 36.7 | 55.05 |
| PGSC0003DMT400096005 | Potato | cytosol, mitochondrion, nucleus | 25.93 | 52.38 |
| PGSC0003DMT400033624 | Potato | nucleus | 42.09 | 52.08 |
| PGSC0003DMT400060623 | Potato | nucleus | 42.09 | 51.44 |
| Solyc04g014260.1.1 | Tomato | nucleus | 42.76 | 51.42 |
| KRG90132 | Soybean | cytosol | 33.33 | 48.29 |
| KRH45574 | Soybean | cytosol | 41.41 | 47.13 |
| KRH69650 | Soybean | nucleus | 46.8 | 47.12 |
| KRG90215 | Soybean | cytosol | 33.33 | 46.7 |
| KRH71953 | Soybean | nucleus | 36.7 | 42.58 |
| KRG90210 | Soybean | nucleus | 36.7 | 42.58 |
| TraesCS5B01G226000.1 | Wheat | mitochondrion | 13.13 | 41.94 |
| TraesCS3B01G484100.1 | Wheat | cytosol | 13.47 | 41.67 |
| KRG90213 | Soybean | nucleus | 35.69 | 41.57 |
| KRG90211 | Soybean | cytosol | 35.69 | 41.25 |
| KRH71954 | Soybean | nucleus | 34.01 | 40.89 |
| CDY54719 | Canola | nucleus | 33.0 | 40.66 |
| Bra037816.1-P | Field mustard | nucleus | 32.66 | 40.08 |
| CDX81284 | Canola | nucleus | 33.67 | 39.22 |
| AT5G65410.1 | Thale cress | nucleus | 36.03 | 38.35 |
| CDY33960 | Canola | nucleus | 34.68 | 38.29 |
| Bra031859.1-P | Field mustard | nucleus | 35.02 | 38.24 |
| CDY37827 | Canola | nucleus | 35.02 | 38.24 |
| TraesCS5B01G141400.1 | Wheat | cytosol | 11.78 | 37.23 |
| CDY14559 | Canola | nucleus | 35.69 | 36.18 |
| Bra024382.1-P | Field mustard | nucleus | 35.69 | 36.18 |
| TraesCS1B01G448600.1 | Wheat | nucleus | 30.64 | 36.11 |
| TraesCS3B01G258400.1 | Wheat | nucleus | 26.6 | 34.05 |
| TraesCS4B01G050800.1 | Wheat | cytosol, mitochondrion, nucleus | 24.58 | 30.93 |
| TraesCS2B01G322200.1 | Wheat | nucleus | 29.97 | 30.38 |
| TraesCS4B01G089700.1 | Wheat | nucleus | 39.39 | 29.47 |
| TraesCS1B01G106800.1 | Wheat | nucleus | 25.59 | 26.21 |
| TraesCS6B01G301000.1 | Wheat | nucleus | 35.69 | 22.99 |
| TraesCS5B01G225700.1 | Wheat | nucleus | 27.95 | 21.28 |
Protein Annotations
| EnsemblPlants:TraesCS5B01G243800.1 | EnsemblPlantsGene:TraesCS5B01G243800 | Gene3D:1.10.10.60 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:Homeodomain_ZF_HD | InterPro:IPR006456 | InterPro:ZF_HD_homeobox_Cys/His_dimer | PANTHER:PTHR31948 |
| PANTHER:PTHR31948:SF25 | PFAM:PD125774 | PFAM:PF04770 | PFscan:PS51523 | SEG:seg | SUPFAM:SSF46689 |
| TIGRFAMs:TIGR01565 | TIGRFAMs:TIGR01566 | MapMan:15.5.3.13 | : | : | : |
Description
No Description!
Coordinates
chr5B:+:425093605..425094498
Molecular Weight (calculated)
31015.4 Da
IEP (calculated)
7.501
GRAVY (calculated)
-0.531
Length
297 amino acids
Sequence
(BLAST)
(BLAST)
001: MDFDDHDDGD EEMQMSMPMP VSSSYEPPPP LSTGFGGAGV APNKPPGGGG GGGGELGGRA KAPGGGARYR ECLKNHAVSI GGHAVDGCGE FIAAGEEGSI
101: DALRCAACNC HRNFHRRESD FPAGGEGSPF SPTAMVPYGG VPHHQFSPYY RTPAGYLHHH QHHMAAAAAA AAAAAGHPRP LALPSTSHSG RDDADELSGM
201: AAGPMSALAP LSSMSLGAGP SGYGSGSGSG KKRFRTKFTQ EQKDKMLAFA ERVGWRIQKH DEAAVLQFCD EVGVKRHVLK VWMHNNKHTL GKKPPSI
101: DALRCAACNC HRNFHRRESD FPAGGEGSPF SPTAMVPYGG VPHHQFSPYY RTPAGYLHHH QHHMAAAAAA AAAAAGHPRP LALPSTSHSG RDDADELSGM
201: AAGPMSALAP LSSMSLGAGP SGYGSGSGSG KKRFRTKFTQ EQKDKMLAFA ERVGWRIQKH DEAAVLQFCD EVGVKRHVLK VWMHNNKHTL GKKPPSI
001: MEIASQEDPI PINTSYGNSG GGHGNMNHHH HANSAPSSLN ITTSNPLLVS SNSNGLGKNH DHSHHHHVGY NIMVTNIKKE KPVVIKYKEC LKNHAATMGG
101: NAIDGCGEFM PSGEEGSIEA LTCSVCNCHR NFHRRETEGE EKTFFSPYLN HHQPPPQQRK LMFHHKMIKS PLPQQMIMPI GVTTAGSNSE SEDLMEEEGG
201: GSLTFRQPPP PPSPYSYGHN QKKRFRTKFT QEQKEKMISF AERVGWKIQR QEESVVQQLC QEIGIRRRVL KVWMHNNKQN LSKKSNNVSN NVDLSAGNND
301: ITENLASTNP
101: NAIDGCGEFM PSGEEGSIEA LTCSVCNCHR NFHRRETEGE EKTFFSPYLN HHQPPPQQRK LMFHHKMIKS PLPQQMIMPI GVTTAGSNSE SEDLMEEEGG
201: GSLTFRQPPP PPSPYSYGHN QKKRFRTKFT QEQKEKMISF AERVGWKIQR QEESVVQQLC QEIGIRRRVL KVWMHNNKQN LSKKSNNVSN NVDLSAGNND
301: ITENLASTNP
Arabidopsis Description
ZHD3Zinc-finger homeodomain protein 3 [Source:UniProtKB/Swiss-Prot;Acc:O64722]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.