Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400084919 | Potato | nucleus | 91.84 | 77.14 |
| Solyc05g051420.1.1 | Tomato | nucleus | 81.63 | 71.86 |
| PGSC0003DMT400050286 | Potato | mitochondrion | 21.09 | 37.35 |
| PGSC0003DMT400060623 | Potato | nucleus | 60.54 | 36.63 |
| VIT_00s0199g00250.t01 | Wine grape | nucleus | 59.18 | 35.66 |
| KRH74513 | Soybean | nucleus | 59.86 | 34.65 |
| GSMUA_Achr7P19060_001 | Banana | nucleus | 46.94 | 33.5 |
| PGSC0003DMT400033624 | Potato | nucleus | 54.42 | 33.33 |
| GSMUA_Achr6P02170_001 | Banana | nucleus | 50.34 | 32.03 |
| GSMUA_Achr3P20390_001 | Banana | nucleus | 44.9 | 31.88 |
| GSMUA_Achr5P05500_001 | Banana | nucleus | 49.66 | 30.67 |
| GSMUA_Achr10P... | Banana | nucleus | 46.94 | 30.13 |
| Zm00001d020774_P001 | Maize | nucleus | 55.78 | 30.04 |
| Os09t0466400-01 | Rice | nucleus | 56.46 | 29.75 |
| PGSC0003DMT400083993 | Potato | nucleus | 36.05 | 29.61 |
| KRH69650 | Soybean | nucleus | 57.14 | 28.47 |
| Zm00001d005931_P001 | Maize | nucleus | 55.1 | 28.32 |
| Os08t0479400-01 | Rice | nucleus | 55.1 | 27.93 |
| EER96888 | Sorghum | nucleus | 57.14 | 27.81 |
| CDY54719 | Canola | nucleus | 44.9 | 27.39 |
| Bra037816.1-P | Field mustard | nucleus | 44.9 | 27.27 |
| TraesCS5D01G253100.1 | Wheat | nucleus | 53.06 | 26.35 |
| Zm00001d031840_P001 | Maize | nucleus | 55.1 | 26.3 |
| PGSC0003DMT400086860 | Potato | cytosol | 21.09 | 26.05 |
| GSMUA_AchrUn_... | Banana | nucleus | 44.22 | 26.0 |
| TraesCS5B01G243800.1 | Wheat | nucleus | 52.38 | 25.93 |
| CDX81284 | Canola | nucleus | 44.9 | 25.88 |
| HORVU5Hr1G069730.1 | Barley | nucleus | 53.06 | 25.83 |
| EES15144 | Sorghum | nucleus | 54.42 | 25.72 |
| PGSC0003DMT400090846 | Potato | cytosol | 21.09 | 25.62 |
| TraesCS5A01G246500.1 | Wheat | nucleus | 51.7 | 25.59 |
| PGSC0003DMT400009581 | Potato | nucleus | 48.98 | 25.35 |
| PGSC0003DMT400053397 | Potato | nucleus | 48.3 | 24.74 |
| CDY37827 | Canola | nucleus | 44.22 | 23.9 |
| Bra031859.1-P | Field mustard | nucleus | 44.22 | 23.9 |
| CDY33960 | Canola | nucleus | 43.54 | 23.79 |
| AT5G65410.1 | Thale cress | nucleus | 44.9 | 23.66 |
| CDY14559 | Canola | nucleus | 45.58 | 22.87 |
| Bra024382.1-P | Field mustard | nucleus | 45.58 | 22.87 |
| PGSC0003DMT400035635 | Potato | nucleus | 43.54 | 20.85 |
| PGSC0003DMT400009033 | Potato | nucleus | 42.18 | 20.53 |
| PGSC0003DMT400080288 | Potato | nucleus | 39.46 | 20.21 |
| PGSC0003DMT400017840 | Potato | nucleus | 42.86 | 19.15 |
| PGSC0003DMT400034368 | Potato | nucleus | 44.9 | 19.08 |
| PGSC0003DMT400044269 | Potato | nucleus | 34.01 | 11.93 |
| PGSC0003DMT400044270 | Potato | cytosol | 34.01 | 6.17 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400096005 | EnsemblPlantsGene:PGSC0003DMG400045576 | Gene3D:1.10.10.60 | InterPro:IPR006456 | InterPro:ZF_HD_homeobox_Cys/His_dimer | PANTHER:PTHR31948 |
| PANTHER:PTHR31948:SF5 | PFAM:PD125774 | PFAM:PF04770 | PFscan:PS51523 | PGSC:PGSC0003DMG400045576 | TIGRFAMs:TIGR01566 |
| UniParc:UPI0002967E2E | UniProt:M1DXI2 | MapMan:15.5.3.13 | : | : | : |
Description
ZF-HD protein dimerisation region containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400045576]
Coordinates
chr5:-:46134898..46136536
Molecular Weight (calculated)
16442.7 Da
IEP (calculated)
8.504
GRAVY (calculated)
-0.612
Length
147 amino acids
Sequence
(BLAST)
(BLAST)
001: MSKYKECLKN HTAGIGGHAV DGCGEFMPSG ENGTVDVFKC AACNCHRNFH RKETVHHHHP CGYSPYIIPR QIPLALPLTS GGTGGGFRED QELLEMCSPN
101: NNINGTLLKK RFRSKFSQEH KDKMLTLAEK LGWKLQRHDE GVVQQIV
101: NNINGTLLKK RFRSKFSQEH KDKMLTLAEK LGWKLQRHDE GVVQQIV
001: MNFEDQEEDM EMSGVNPPCG YDSLSGEGAT SSGGGGVGRS KGVGAKIRYR ECLKNHAVNI GGHAVDGCCE FMPSGEDGTL DALKCAACGC HRNFHRKETE
101: SIGGRAHRVP TYYNRPPQPH QPPGYLHLTS PAAPYRPPAA SGDEEDTSNP SSSGGTTKRF RTKFTAEQKE KMLAFAERLG WRIQKHDDVA VEQFCAETGV
201: RRQVLKIWMH NNKNSLGKKP
101: SIGGRAHRVP TYYNRPPQPH QPPGYLHLTS PAAPYRPPAA SGDEEDTSNP SSSGGTTKRF RTKFTAEQKE KMLAFAERLG WRIQKHDDVA VEQFCAETGV
201: RRQVLKIWMH NNKNSLGKKP
Arabidopsis Description
ATHB22homeobox protein 22 [Source:TAIR;Acc:AT4G24660]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.