Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc02g067320.1.1 | Tomato | nucleus | 91.49 | 90.94 |
| PGSC0003DMT400034368 | Potato | nucleus | 76.9 | 73.12 |
| PGSC0003DMT400035635 | Potato | nucleus | 59.57 | 63.84 |
| KRH01172 | Soybean | nucleus | 55.32 | 53.85 |
| Bra039038.1-P | Field mustard | nucleus | 48.33 | 51.46 |
| KRH18475 | Soybean | nucleus | 51.67 | 51.36 |
| CDY56033 | Canola | nucleus | 43.16 | 51.26 |
| CDY20008 | Canola | nucleus | 43.77 | 51.25 |
| PGSC0003DMT400080288 | Potato | nucleus | 44.07 | 50.52 |
| CDY00104 | Canola | nucleus | 47.72 | 50.32 |
| Bra025644.1-P | Field mustard | nucleus | 48.33 | 50.16 |
| CDX74428 | Canola | nucleus | 48.33 | 50.16 |
| AT3G28920.1 | Thale cress | nucleus | 47.11 | 49.68 |
| VIT_14s0108g00750.t01 | Wine grape | nucleus | 52.28 | 48.45 |
| AT5G39760.1 | Thale cress | nucleus | 48.94 | 48.2 |
| CDX85230 | Canola | nucleus | 49.24 | 47.79 |
| KRH40099 | Soybean | nucleus, plastid | 44.68 | 47.73 |
| CDX86403 | Canola | nucleus | 49.24 | 47.09 |
| Bra025363.1-P | Field mustard | nucleus | 48.94 | 46.8 |
| PGSC0003DMT400084919 | Potato | nucleus | 24.62 | 46.29 |
| PGSC0003DMT400096005 | Potato | cytosol, mitochondrion, nucleus | 19.15 | 42.86 |
| PGSC0003DMT400083993 | Potato | nucleus | 23.1 | 42.46 |
| PGSC0003DMT400050286 | Potato | mitochondrion | 10.03 | 39.76 |
| PGSC0003DMT400033624 | Potato | nucleus | 28.27 | 38.75 |
| PGSC0003DMT400060623 | Potato | nucleus | 27.05 | 36.63 |
| PGSC0003DMT400090846 | Potato | cytosol | 11.85 | 32.23 |
| PGSC0003DMT400053397 | Potato | nucleus | 27.05 | 31.01 |
| PGSC0003DMT400086860 | Potato | cytosol | 10.94 | 30.25 |
| PGSC0003DMT400009581 | Potato | nucleus | 24.01 | 27.82 |
| PGSC0003DMT400009033 | Potato | nucleus | 25.23 | 27.48 |
| PGSC0003DMT400044269 | Potato | nucleus | 17.33 | 13.6 |
| PGSC0003DMT400044270 | Potato | cytosol | 20.67 | 8.4 |
Protein Annotations
| Gene3D:1.10.10.60 | EntrezGene:102603647 | MapMan:15.5.3.13 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:Homeodomain_ZF_HD | InterPro:IPR006456 | UniProt:M1A9K2 | PFAM:PD125774 |
| PFAM:PF04770 | EnsemblPlantsGene:PGSC0003DMG400006928 | PGSC:PGSC0003DMG400006928 | EnsemblPlants:PGSC0003DMT400017840 | PFscan:PS51523 | PANTHER:PTHR31948 |
| PANTHER:PTHR31948:SF29 | SUPFAM:SSF46689 | TIGRFAMs:TIGR01565 | TIGRFAMs:TIGR01566 | UniParc:UPI00029606D2 | RefSeq:XP_006357111.1 |
| InterPro:ZF_HD_homeobox_Cys/His_dimer | SEG:seg | : | : | : | : |
Description
Homeobox domain, ZF-HD class; ZF-HD homeobox protein Cys/His-rich dimerisation region; Homeodomain [Source:PGSC_GENE;Acc:PGSC0003DMG400006928]
Coordinates
chr2:-:25814780..25816152
Molecular Weight (calculated)
36063.1 Da
IEP (calculated)
8.075
GRAVY (calculated)
-0.787
Length
329 amino acids
Sequence
(BLAST)
(BLAST)
001: MELNTNTTTA PAAAIKTPEL AETETPSRIQ QPKPFPFSNG VLKRKNHHPV VVVYKECLKN HAANLGTHAV DGCGEFLPIP AANPADPTSL KCAACGCHRN
101: FHRRDPEEPP PIATAAIEYQ PHHRHHPPPP CGDHSSPNSP SPPPISSAYY PASAPHMLLA LSAGFSGEKN QNLPTSTTPV AVANSNGRKR FRTKFTPDQK
201: MKMLKFAEKV EWKMQKRDED LVNNFCNEIG VEKGVLKVWM HNNKTTSVSG KKLDQPITGN GDHQNGNTNN IVNGFCIVSR NNTTHPDQNN TDSEFHIHHE
301: SSMNDDNKKE HLSFDANNVV VTNGSSSSS
101: FHRRDPEEPP PIATAAIEYQ PHHRHHPPPP CGDHSSPNSP SPPPISSAYY PASAPHMLLA LSAGFSGEKN QNLPTSTTPV AVANSNGRKR FRTKFTPDQK
201: MKMLKFAEKV EWKMQKRDED LVNNFCNEIG VEKGVLKVWM HNNKTTSVSG KKLDQPITGN GDHQNGNTNN IVNGFCIVSR NNTTHPDQNN TDSEFHIHHE
301: SSMNDDNKKE HLSFDANNVV VTNGSSSSS
001: MLEVRSMDMT PKSPEPESET PTRIQPAKPI SFSNGIIKRH HHHHHNNNKV TYKECLKNHA AAIGGHALDG CGEFMPSPSS TPSDPTSLKC AACGCHRNFH
101: RRETDDSSAV PPPSLLPSST TTAAIEYQPH HRHHPPPPLA PPLPRSPNSS SPPPISSSYM LLALSGNNKT APFSDLNFAA AANHLSATPG SRKRFRTKFS
201: SNQKEKMHEF ADRIGWKIQK RDEDEVRDFC REIGVDKGVL KVWMHNNKNS FKFSGGGATT VQRNDNGIGG ENSNDDGVRG LANDGDGGGG RFESDSGGAD
301: GGGNVNASSS SS
101: RRETDDSSAV PPPSLLPSST TTAAIEYQPH HRHHPPPPLA PPLPRSPNSS SPPPISSSYM LLALSGNNKT APFSDLNFAA AANHLSATPG SRKRFRTKFS
201: SNQKEKMHEF ADRIGWKIQK RDEDEVRDFC REIGVDKGVL KVWMHNNKNS FKFSGGGATT VQRNDNGIGG ENSNDDGVRG LANDGDGGGG RFESDSGGAD
301: GGGNVNASSS SS
Arabidopsis Description
ZHD9Zinc-finger homeodomain protein 9 [Source:UniProtKB/Swiss-Prot;Acc:Q9LHF0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.