Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY56033 | Canola | nucleus | 70.06 | 84.48 |
| CDX74428 | Canola | nucleus | 77.54 | 81.7 |
| Bra025644.1-P | Field mustard | nucleus | 77.54 | 81.7 |
| AT3G28920.1 | Thale cress | nucleus | 66.17 | 70.83 |
| AT5G15210.1 | Thale cress | nucleus | 47.9 | 59.04 |
| Solyc02g067310.2.1 | Tomato | nucleus | 46.71 | 53.42 |
| KRH18475 | Soybean | nucleus | 50.6 | 51.06 |
| KRH01172 | Soybean | nucleus | 51.5 | 50.89 |
| PGSC0003DMT400035635 | Potato | nucleus | 45.81 | 49.84 |
| PGSC0003DMT400034368 | Potato | nucleus | 51.5 | 49.71 |
| Solyc02g067320.1.1 | Tomato | nucleus | 48.8 | 49.24 |
| PGSC0003DMT400017840 | Potato | nucleus | 48.2 | 48.94 |
| VIT_14s0108g00750.t01 | Wine grape | nucleus | 49.7 | 46.76 |
| AT1G18835.1 | Thale cress | mitochondrion | 11.68 | 44.32 |
| KRH40099 | Soybean | nucleus, plastid | 40.42 | 43.83 |
| AT1G69600.1 | Thale cress | nucleus | 31.44 | 43.39 |
| AT5G60480.1 | Thale cress | nucleus | 27.25 | 40.81 |
| AT1G74660.1 | Thale cress | mitochondrion | 11.68 | 38.24 |
| AT3G28917.1 | Thale cress | mitochondrion | 11.08 | 37.0 |
| AT4G24660.2 | Thale cress | nucleus | 24.85 | 35.93 |
| AT3G50890.1 | Thale cress | nucleus | 26.05 | 34.94 |
| AT5G65410.1 | Thale cress | nucleus | 26.05 | 31.18 |
| AT2G18350.1 | Thale cress | nucleus | 23.35 | 29.77 |
| AT1G14440.1 | Thale cress | nucleus | 26.65 | 28.53 |
| AT2G02540.2 | Thale cress | nucleus | 26.05 | 28.06 |
| AT1G75240.1 | Thale cress | nucleus | 24.85 | 26.86 |
| AT5G42780.1 | Thale cress | nucleus | 18.56 | 25.62 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.13 | EntrezGene:833972 | ProteinID:AED94472.1 | EMBL:AK227191 | ArrayExpress:AT5G39760 |
| EnsemblPlantsGene:AT5G39760 | RefSeq:AT5G39760 | TAIR:AT5G39760 | RefSeq:AT5G39760-TAIR-G | EnsemblPlants:AT5G39760.1 | TAIR:AT5G39760.1 |
| EMBL:AY086395 | EMBL:AY091034 | EMBL:AY117347 | Unigene:At.9361 | Symbol:AtHB23 | ProteinID:BAB11382.1 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009719 |
| GO:GO:0009739 | GO:GO:0009740 | GO:GO:0009987 | GO:GO:0042803 | GO:GO:0046872 | InterPro:Homeobox-like_sf |
| InterPro:Homeodomain_ZF_HD | InterPro:IPR006456 | RefSeq:NP_568570.1 | PFAM:PD125774 | PFAM:PF04770 | PO:PO:0000013 |
| PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 |
| PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020100 |
| PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PFscan:PS51523 | PANTHER:PTHR31948 | PANTHER:PTHR31948:SF29 |
| UniProt:Q9FIW9 | SUPFAM:SSF46689 | TIGRFAMs:TIGR01565 | TIGRFAMs:TIGR01566 | UniParc:UPI00000ABA06 | InterPro:ZF_HD_homeobox_Cys/His_dimer |
| SEG:seg | : | : | : | : | : |
Description
ZHD10Zinc-finger homeodomain protein 10 [Source:UniProtKB/Swiss-Prot;Acc:Q9FIW9]
Coordinates
chr5:+:15911350..15912860
Molecular Weight (calculated)
36388.0 Da
IEP (calculated)
8.437
GRAVY (calculated)
-0.981
Length
334 amino acids
Sequence
(BLAST)
(BLAST)
001: MMDMTPTITT TTTPTPKSPE PESETPTRIQ PAKPISFSNG IIKRHHHHHH PLLFTYKECL KNHAAALGGH ALDGCGEFMP SPSSISSDPT SLKCAACGCH
101: RNFHRRDPDN NNDSSQIPPP PSTAVEYQPH HRHHPPPPPP PPPPRSPNSA SPPPISSSYM LLSLSGTNNN NNNLASFSDL NFSAGNNHHH HHQHTLHGSR
201: KRFRTKFSQF QKEKMHEFAE RVGWKMQKRD EDDVRDFCRQ IGVDKSVLKV WMHNNKNTFN RRDIAGNEIR QIDNGGGNHT PILAGEINNH NNGHHGVGGG
301: GELHQSVSSG GGGGGFDSDS GGANGGNVNG SSSS
101: RNFHRRDPDN NNDSSQIPPP PSTAVEYQPH HRHHPPPPPP PPPPRSPNSA SPPPISSSYM LLSLSGTNNN NNNLASFSDL NFSAGNNHHH HHQHTLHGSR
201: KRFRTKFSQF QKEKMHEFAE RVGWKMQKRD EDDVRDFCRQ IGVDKSVLKV WMHNNKNTFN RRDIAGNEIR QIDNGGGNHT PILAGEINNH NNGHHGVGGG
301: GELHQSVSSG GGGGGFDSDS GGANGGNVNG SSSS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.