Factsheet for VIT_14s0108g00750.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_00s0199g00250.t01
VIT_01s0011g06360.t01
VIT_01s0026g02460.t01
VIT_12s0035g01880.t01
VIT_14s0108g00750.t01
VIT_17s0000g00810.t01
VIT_18s0001g12580.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G28920.1	VIT_12s0035g01880.t01	AT1G14440.1	16428600
AT3G28920.1	VIT_18s0001g12580.t01	AT1G75240.1	16428600
AT3G28920.1	VIT_18s0001g12580.t01	AT2G18350.1	16428600
AT3G28920.1	VIT_18s0001g12580.t01	AT3G50890.1	16428600
AT3G28920.1	VIT_01s0026g02460.t01	AT5G15210.1	16428600
AT3G28920.1	VIT_14s0108g00750.t01	AT5G39760.1	16428600
AT3G28920.1	VIT_00s0199g00250.t01	AT5G65410.1	16428600
AT5G39760.1	VIT_12s0035g01880.t01	AT1G14440.1	16428600
AT5G39760.1	VIT_01s0011g06360.t01	AT1G14687.1	21798944
AT5G39760.1	VIT_18s0001g12580.t01	AT1G75240.1	16428600
AT5G39760.1	VIT_18s0001g12580.t01	AT2G18350.1	16428600
AT5G39760.1	VIT_14s0108g00750.t01	AT3G28920.1	16428600
AT5G39760.1	VIT_18s0001g12580.t01	AT3G50890.1	16428600
AT5G39760.1	VIT_01s0026g02460.t01	AT5G15210.1	16428600
AT5G39760.1	VIT_01s0026g02460.t01	AT5G15210.1	21245844
AT5G39760.1	VIT_01s0026g02460.t01	AT5G15210.1	21798944
AT5G39760.1	VIT_14s0108g00750.t01	AT5G39760.1	16428600
AT5G39760.1	VIT_14s0108g00750.t01	AT5G39760.1	21245844
AT5G39760.1	VIT_17s0000g00810.t01	AT5G42780.1	16428600
AT5G39760.1	VIT_17s0000g00810.t01	AT5G42780.1	21798944
AT5G39760.1	VIT_00s0199g00250.t01	AT5G65410.1	16428600

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_10s0042g00210.t01	Wine grape	nucleus	47.61	84.08
Solyc02g067310.2.1	Tomato	nucleus	49.3	59.93
VIT_17s0000g06200.t01	Wine grape	cytosol	7.89	57.14
KRH01172	Soybean	nucleus	52.39	55.03
VIT_01s0026g02460.t01	Wine grape	nucleus	35.21	54.35
Bra039038.1-P	Field mustard	nucleus	46.76	53.72
CDY20008	Canola	nucleus	42.25	53.38
CDY00104	Canola	nucleus	46.76	53.21
PGSC0003DMT400035635	Potato	nucleus	45.92	53.09
AT3G28920.1	Thale cress	nucleus	46.48	52.88
Solyc02g067320.1.1	Tomato	nucleus	49.3	52.87
PGSC0003DMT400034368	Potato	nucleus	50.99	52.31
PGSC0003DMT400017840	Potato	nucleus	48.45	52.28
CDX85230	Canola	nucleus	49.86	52.21
KRH40099	Soybean	nucleus, plastid	44.51	51.3
CDY56033	Canola	nucleus	40.0	51.26
Bra025363.1-P	Field mustard	nucleus	49.58	51.16
CDX86403	Canola	nucleus	49.58	51.16
CDX74428	Canola	nucleus	45.63	51.1
Bra025644.1-P	Field mustard	nucleus	45.63	51.1
KRH18475	Soybean	nucleus	47.32	50.76
AT5G39760.1	Thale cress	nucleus	46.76	49.7
VIT_14s0108g00760.t01	Wine grape	mitochondrion	12.11	45.26
VIT_17s0000g00810.t01	Wine grape	nucleus	19.44	44.52
VIT_01s0026g02450.t01	Wine grape	cytosol	10.42	43.53
VIT_00s0199g00250.t01	Wine grape	nucleus	27.32	39.75
VIT_18s0001g07140.t01	Wine grape	nucleus	25.63	39.57
VIT_07s0130g00240.t01	Wine grape	nucleus	19.15	34.34
VIT_12s0035g01880.t01	Wine grape	nucleus	25.63	32.38
VIT_18s0117g00270.t01	Wine grape	nucleus	23.94	31.25
VIT_14s0108g00810.t01	Wine grape	cytosol	10.99	30.23
VIT_18s0001g12580.t01	Wine grape	nucleus	25.63	28.8
VIT_08s0056g01130.t01	Wine grape	nucleus	10.42	27.41
VIT_04s0023g01880.t01	Wine grape	nucleus	25.35	20.79

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100245714	wikigene:100245714	MapMan:15.5.3.13	ProteinID:CCB47553	ProteinID:CCB47553.1
UniProt:F6H5T2	EMBL:FN595239	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	InterPro:Homeobox-like_sf	InterPro:Homeodomain_ZF_HD	InterPro:IPR006456
EntrezGene:LOC100245714	wikigene:LOC100245714	PFAM:PD125774	PFAM:PF04770	PFscan:PS51523	PANTHER:PTHR31948
PANTHER:PTHR31948:SF47	SUPFAM:SSF46689	TIGRFAMs:TIGR01565	TIGRFAMs:TIGR01566	TMHMM:TMhelix	UniParc:UPI0002107EA1
ArrayExpress:VIT_14s0108g00750	EnsemblPlantsGene:VIT_14s0108g00750	EnsemblPlants:VIT_14s0108g00750.t01	RefSeq:XP_002283533	RefSeq:XP_002283533.1	InterPro:ZF_HD_homeobox_Cys/His_dimer
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr14:+:29448389..29462308

Molecular Weight (calculated)

39731.3 Da

IEP (calculated)

7.473

GRAVY (calculated)

-0.874

Length

355 amino acids

Sequence
(BLAST)

001: MNNIVKHFFP EAETETPTQI QPRKGLSLTN GVLKRHQQHH HHHHHHFAAP QVVVAYKECL KNHAASLGGH ALDGCGEFMP SPTATSADPT SLKCAACGCH
101: RNFHRREPDD PPPTTHVIEY QPHHRHQPPP PPPRPRSPNS PSPPPISSSY YPSAPHMLLA LSAGISGPPE NAPPISSSPA SGANGRKRFR TKFSQGQKEK
201: MFEFAERVGW KMQKRDEELV AEFCNEVGVD KGVLKVWMHN NKNTFGKRDV NGSRTSLDDN NENNENNENT ENTETNETNE NNDNTPHTME TIHHTPNHNH
301: TNPNPNNNDT TTAHLATNVP LYKHLRIFSA FLAAYFIELM VSPFLFNLTL LYLSG

Best Arabidopsis Sequence Match ( AT3G28920.1 )
(BLAST)

001: MLEVRSMDMT PKSPEPESET PTRIQPAKPI SFSNGIIKRH HHHHHNNNKV TYKECLKNHA AAIGGHALDG CGEFMPSPSS TPSDPTSLKC AACGCHRNFH
101: RRETDDSSAV PPPSLLPSST TTAAIEYQPH HRHHPPPPLA PPLPRSPNSS SPPPISSSYM LLALSGNNKT APFSDLNFAA AANHLSATPG SRKRFRTKFS
201: SNQKEKMHEF ADRIGWKIQK RDEDEVRDFC REIGVDKGVL KVWMHNNKNS FKFSGGGATT VQRNDNGIGG ENSNDDGVRG LANDGDGGGG RFESDSGGAD
301: GGGNVNASSS SS

Arabidopsis Description

ZHD9Zinc-finger homeodomain protein 9 [Source:UniProtKB/Swiss-Prot;Acc:Q9LHF0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.