Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc02g067310.2.1 | Tomato | nucleus | 76.88 | 91.1 |
| PGSC0003DMT400017840 | Potato | nucleus | 73.12 | 76.9 |
| PGSC0003DMT400035635 | Potato | nucleus | 56.36 | 63.52 |
| CDY56033 | Canola | nucleus | 43.64 | 54.51 |
| Bra039038.1-P | Field mustard | nucleus | 47.98 | 53.72 |
| CDY20008 | Canola | nucleus | 43.35 | 53.38 |
| KRH01172 | Soybean | nucleus | 52.02 | 53.25 |
| AT3G28920.1 | Thale cress | nucleus | 47.98 | 53.21 |
| Bra025644.1-P | Field mustard | nucleus | 48.55 | 53.0 |
| CDX74428 | Canola | nucleus | 48.55 | 53.0 |
| CDY00104 | Canola | nucleus | 47.69 | 52.88 |
| KRH18475 | Soybean | nucleus | 50.0 | 52.27 |
| PGSC0003DMT400080288 | Potato | nucleus | 43.06 | 51.92 |
| AT5G39760.1 | Thale cress | nucleus | 49.71 | 51.5 |
| VIT_14s0108g00750.t01 | Wine grape | nucleus | 52.31 | 50.99 |
| CDX85230 | Canola | nucleus | 49.71 | 50.74 |
| CDX86403 | Canola | nucleus | 48.84 | 49.13 |
| Bra025363.1-P | Field mustard | nucleus | 48.55 | 48.84 |
| PGSC0003DMT400084919 | Potato | nucleus | 24.28 | 48.0 |
| KRH40099 | Soybean | nucleus, plastid | 41.04 | 46.1 |
| PGSC0003DMT400096005 | Potato | cytosol, mitochondrion, nucleus | 19.08 | 44.9 |
| PGSC0003DMT400083993 | Potato | nucleus | 23.12 | 44.69 |
| PGSC0003DMT400050286 | Potato | mitochondrion | 10.12 | 42.17 |
| PGSC0003DMT400033624 | Potato | nucleus | 28.32 | 40.83 |
| PGSC0003DMT400060623 | Potato | nucleus | 26.01 | 37.04 |
| PGSC0003DMT400090846 | Potato | cytosol | 11.27 | 32.23 |
| PGSC0003DMT400086860 | Potato | cytosol | 10.69 | 31.09 |
| PGSC0003DMT400053397 | Potato | nucleus | 25.72 | 31.01 |
| PGSC0003DMT400009581 | Potato | nucleus | 23.12 | 28.17 |
| PGSC0003DMT400009033 | Potato | nucleus | 23.7 | 27.15 |
| PGSC0003DMT400044269 | Potato | nucleus | 16.76 | 13.84 |
| PGSC0003DMT400044270 | Potato | cytosol | 20.23 | 8.64 |
Protein Annotations
| Gene3D:1.10.10.60 | EntrezGene:102597818 | MapMan:15.5.3.13 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:Homeodomain_ZF_HD | InterPro:IPR006456 | UniProt:M1B0K2 | PFAM:PD125774 |
| PFAM:PF04770 | EnsemblPlantsGene:PGSC0003DMG400013213 | PGSC:PGSC0003DMG400013213 | EnsemblPlants:PGSC0003DMT400034368 | PFscan:PS51523 | PANTHER:PTHR31948 |
| PANTHER:PTHR31948:SF47 | SUPFAM:SSF46689 | TIGRFAMs:TIGR01565 | TIGRFAMs:TIGR01566 | UniParc:UPI0002956D4C | RefSeq:XP_006363398.1 |
| InterPro:ZF_HD_homeobox_Cys/His_dimer | SEG:seg | : | : | : | : |
Description
ZF-HD homeobox protein [Source:PGSC_GENE;Acc:PGSC0003DMG400013213]
Coordinates
chr2:+:25725358..25726928
Molecular Weight (calculated)
38029.1 Da
IEP (calculated)
7.725
GRAVY (calculated)
-0.863
Length
346 amino acids
Sequence
(BLAST)
(BLAST)
001: MDLTNNTTIT TTTTTTTTVK TPEAEIETPT QIQKLKPFPF SNGVLKRKSS FHHHPVVVIY RECLKNHAAS LGGHAVDGCG EFLPSPTANP SDPTSLKCAA
101: CGCHRNFHRR EPEEPVVIPP PPIATAVLEY QPHHRHHPPP PLQVPRGDHS SPNSPSPPPI SSAYYPASAP HMLLALSAGF CGEKNQNPTS APLANSNGRK
201: RFRTKFTPDQ KVKMLELAER IGWKMQKRDE DLVSNFCNEI GVEKGVLKVW MHNNKNTFGK KSDQPNSGSG DGDNDNDNDD NHHQNGNTNS VNGFCIVSRN
301: NNTDSEFHQH IQQHQHESNN SDNKKGIIHH LHTSDSVVAT NGSSSS
101: CGCHRNFHRR EPEEPVVIPP PPIATAVLEY QPHHRHHPPP PLQVPRGDHS SPNSPSPPPI SSAYYPASAP HMLLALSAGF CGEKNQNPTS APLANSNGRK
201: RFRTKFTPDQ KVKMLELAER IGWKMQKRDE DLVSNFCNEI GVEKGVLKVW MHNNKNTFGK KSDQPNSGSG DGDNDNDNDD NHHQNGNTNS VNGFCIVSRN
301: NNTDSEFHQH IQQHQHESNN SDNKKGIIHH LHTSDSVVAT NGSSSS
001: MLEVRSMDMT PKSPEPESET PTRIQPAKPI SFSNGIIKRH HHHHHNNNKV TYKECLKNHA AAIGGHALDG CGEFMPSPSS TPSDPTSLKC AACGCHRNFH
101: RRETDDSSAV PPPSLLPSST TTAAIEYQPH HRHHPPPPLA PPLPRSPNSS SPPPISSSYM LLALSGNNKT APFSDLNFAA AANHLSATPG SRKRFRTKFS
201: SNQKEKMHEF ADRIGWKIQK RDEDEVRDFC REIGVDKGVL KVWMHNNKNS FKFSGGGATT VQRNDNGIGG ENSNDDGVRG LANDGDGGGG RFESDSGGAD
301: GGGNVNASSS SS
101: RRETDDSSAV PPPSLLPSST TTAAIEYQPH HRHHPPPPLA PPLPRSPNSS SPPPISSSYM LLALSGNNKT APFSDLNFAA AANHLSATPG SRKRFRTKFS
201: SNQKEKMHEF ADRIGWKIQK RDEDEVRDFC REIGVDKGVL KVWMHNNKNS FKFSGGGATT VQRNDNGIGG ENSNDDGVRG LANDGDGGGG RFESDSGGAD
301: GGGNVNASSS SS
Arabidopsis Description
ZHD9Zinc-finger homeodomain protein 9 [Source:UniProtKB/Swiss-Prot;Acc:Q9LHF0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.