Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc05g007580.1.1 | Tomato | nucleus | 93.38 | 90.24 |
| Os09t0414600-02 | Rice | nucleus | 19.16 | 50.46 |
| VIT_01s0026g02460.t01 | Wine grape | nucleus | 37.98 | 47.39 |
| AT5G15210.1 | Thale cress | nucleus | 42.51 | 45.02 |
| PGSC0003DMT400035635 | Potato | nucleus | 47.74 | 44.63 |
| PGSC0003DMT400017840 | Potato | nucleus | 50.52 | 44.07 |
| Bra008712.1-P | Field mustard | cytosol | 39.72 | 43.35 |
| PGSC0003DMT400034368 | Potato | nucleus | 51.92 | 43.06 |
| CDX69541 | Canola | nucleus | 39.37 | 42.97 |
| PGSC0003DMT400084919 | Potato | nucleus | 26.13 | 42.86 |
| PGSC0003DMT400083993 | Potato | nucleus | 26.48 | 42.46 |
| GSMUA_Achr6P02700_001 | Banana | nucleus | 35.19 | 42.44 |
| KRH74865 | Soybean | nucleus | 43.55 | 42.23 |
| PGSC0003DMT400050286 | Potato | mitochondrion | 11.85 | 40.96 |
| KRH70724 | Soybean | nucleus | 41.46 | 40.89 |
| TraesCS3A01G308700.1 | Wheat | nucleus | 25.78 | 40.0 |
| CDX85059 | Canola | nucleus | 33.1 | 39.92 |
| GSMUA_Achr10P... | Banana | nucleus | 36.24 | 39.85 |
| KRG89637 | Soybean | nucleus | 25.09 | 39.56 |
| PGSC0003DMT400096005 | Potato | cytosol, mitochondrion, nucleus | 20.21 | 39.46 |
| HORVU1Hr1G013140.1 | Barley | cytosol | 9.76 | 37.33 |
| TraesCS1D01G064300.1 | Wheat | mitochondrion | 22.3 | 36.99 |
| KRH50585 | Soybean | nucleus | 44.6 | 35.75 |
| Os08t0438400-01 | Rice | plastid | 39.02 | 33.14 |
| PGSC0003DMT400060623 | Potato | nucleus | 27.87 | 32.92 |
| PGSC0003DMT400033624 | Potato | nucleus | 26.83 | 32.08 |
| Zm00001d005757_P001 | Maize | nucleus | 39.37 | 31.3 |
| Zm00001d020460_P001 | Maize | nucleus | 39.72 | 30.81 |
| KXG35632 | Sorghum | nucleus | 40.42 | 30.45 |
| PGSC0003DMT400053397 | Potato | nucleus | 30.31 | 30.31 |
| Zm00001d032175_P001 | Maize | cytosol | 37.98 | 29.22 |
| TraesCS1A01G087700.1 | Wheat | nucleus | 28.92 | 29.02 |
| Zm00001d050443_P001 | Maize | nucleus | 36.59 | 28.69 |
| TraesCS1B01G106800.1 | Wheat | nucleus | 28.92 | 28.62 |
| OQU86730 | Sorghum | nucleus | 26.13 | 28.3 |
| PGSC0003DMT400009581 | Potato | nucleus | 27.18 | 27.46 |
| EES15050 | Sorghum | cytosol | 37.28 | 27.44 |
| TraesCS5A01G227100.1 | Wheat | nucleus | 36.59 | 27.42 |
| PGSC0003DMT400090846 | Potato | cytosol | 11.5 | 27.27 |
| TraesCS5D01G234600.1 | Wheat | nucleus | 36.59 | 27.13 |
| TraesCS5B01G225700.1 | Wheat | nucleus | 36.59 | 26.92 |
| PGSC0003DMT400086860 | Potato | cytosol | 11.15 | 26.89 |
| HORVU5Hr1G065740.1 | Barley | nucleus | 35.89 | 26.68 |
| PGSC0003DMT400009033 | Potato | nucleus | 27.87 | 26.49 |
| PGSC0003DMT400044269 | Potato | nucleus | 18.47 | 12.65 |
| PGSC0003DMT400044270 | Potato | cytosol | 23.0 | 8.15 |
Protein Annotations
| Gene3D:1.10.10.60 | EntrezGene:102604503 | MapMan:15.5.3.13 | ProteinID:ABO92969 | ProteinID:ABO92969.1 | EMBL:EF514212 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:Homeodomain_ZF_HD |
| InterPro:IPR006456 | UniProt:M1D396 | PFAM:PD125774 | PFAM:PF04770 | EnsemblPlantsGene:PGSC0003DMG400031256 | PGSC:PGSC0003DMG400031256 |
| EnsemblPlants:PGSC0003DMT400080288 | PFscan:PS51523 | PANTHER:PTHR31948 | PANTHER:PTHR31948:SF28 | SUPFAM:SSF46689 | TIGRFAMs:TIGR01565 |
| TIGRFAMs:TIGR01566 | UniParc:UPI00029567F8 | RefSeq:XP_006366102.1 | InterPro:ZF_HD_homeobox_Cys/His_dimer | SEG:seg | : |
Description
ZF-HD homeobox protein [Source:PGSC_GENE;Acc:PGSC0003DMG400031256]
Coordinates
chr5:+:4920888..4922194
Molecular Weight (calculated)
31789.7 Da
IEP (calculated)
7.295
GRAVY (calculated)
-0.924
Length
287 amino acids
Sequence
(BLAST)
(BLAST)
001: MELTCSTNPT PTSTKTPDSE VDTPPLIKPL SFSNGNNHHN HHHELPPCTA VIYKECLKNH AASLGGHAVD GCGEFMPSPE STPSDPISLK CAACGCHRNF
101: HRREPSDDSS PPAHFIDFRH HIFPQIKRFS PSPSPSLSLS PPPLPSLFQP QPVTPTGLKS ENPNGRKRFR TKFTAEQKEK MHSFSEKLGW KLQKCDETAV
201: DEFCNEIGVG KSVLRVWMHN NKNTIGKKDY QSSRDHSFEN KNGFNINGTA SSNEEEDHHK SNNNDNSTTS NCELHLHIST NGSSSSS
101: HRREPSDDSS PPAHFIDFRH HIFPQIKRFS PSPSPSLSLS PPPLPSLFQP QPVTPTGLKS ENPNGRKRFR TKFTAEQKEK MHSFSEKLGW KLQKCDETAV
201: DEFCNEIGVG KSVLRVWMHN NKNTIGKKDY QSSRDHSFEN KNGFNINGTA SSNEEEDHHK SNNNDNSTTS NCELHLHIST NGSSSSS
001: MDVIATTTTI VSDLDSRQPE IEAPIRIQPA KPISFSNGKR CHHHHLASEA VAVATYKECL KNHAAGIGGH ALDGCGEFMP SPSFNSNDPA SLTCAACGCH
101: RNFHRREEDP SSLSAIVPAI EFRPHNRHQL PPPPPPHLAG IRSPDDDDSA SPPPISSSYM LLALSGGRGG ANTAVPMSRK RFRTKFSQYQ KEKMFEFSER
201: VGWRMPKADD VVVKEFCREI GVDKSVFKVW MHNNKISGRS GARRANGGVV VGGVGDSRQS VVPTNGSFSS T
101: RNFHRREEDP SSLSAIVPAI EFRPHNRHQL PPPPPPHLAG IRSPDDDDSA SPPPISSSYM LLALSGGRGG ANTAVPMSRK RFRTKFSQYQ KEKMFEFSER
201: VGWRMPKADD VVVKEFCREI GVDKSVFKVW MHNNKISGRS GARRANGGVV VGGVGDSRQS VVPTNGSFSS T
Arabidopsis Description
ZHD8Zinc-finger homeodomain protein 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXG0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.