Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU1Hr1G013140.1 | Barley | cytosol | 24.32 | 60.0 |
| TraesCS1A01G087700.1 | Wheat | nucleus | 82.7 | 53.5 |
| TraesCS5A01G142700.1 | Wheat | cytosol | 16.22 | 31.91 |
| TraesCS3A01G448100.1 | Wheat | cytosol | 16.22 | 31.25 |
| TraesCS3A01G448000.1 | Wheat | cytosol | 16.22 | 31.25 |
| TraesCS5A01G227200.1 | Wheat | mitochondrion | 15.68 | 31.18 |
| GSMUA_Achr6P02700_001 | Banana | nucleus | 37.84 | 29.41 |
| GSMUA_Achr10P... | Banana | nucleus | 38.38 | 27.2 |
| PGSC0003DMT400080288 | Potato | nucleus | 40.0 | 25.78 |
| Solyc05g007580.1.1 | Tomato | nucleus | 39.46 | 24.58 |
| TraesCS1A01G418600.1 | Wheat | nucleus | 29.73 | 24.44 |
| KRG89637 | Soybean | nucleus | 23.24 | 23.63 |
| AT5G15210.1 | Thale cress | nucleus | 34.05 | 23.25 |
| TraesCS3A01G226100.1 | Wheat | nucleus | 29.19 | 22.98 |
| TraesCS4A01G264100.1 | Wheat | cytosol, mitochondrion, nucleus | 28.65 | 22.46 |
| Bra008712.1-P | Field mustard | cytosol | 31.89 | 22.43 |
| KRH70724 | Soybean | nucleus | 35.14 | 22.34 |
| KRH74865 | Soybean | nucleus | 35.68 | 22.3 |
| TraesCS5A01G227100.1 | Wheat | nucleus | 45.95 | 22.19 |
| CDX69541 | Canola | nucleus | 31.35 | 22.05 |
| Zm00001d020460_P001 | Maize | nucleus | 43.78 | 21.89 |
| KXG35632 | Sorghum | nucleus | 43.78 | 21.26 |
| TraesCS2A01G305400.1 | Wheat | nucleus | 33.51 | 21.02 |
| TraesCS5A01G246500.1 | Wheat | nucleus | 31.89 | 19.87 |
| VIT_01s0026g02460.t01 | Wine grape | nucleus | 23.78 | 19.13 |
| KRH50585 | Soybean | nucleus | 36.76 | 18.99 |
| CDX85059 | Canola | nucleus | 24.32 | 18.91 |
| TraesCS4A01G226800.1 | Wheat | nucleus | 36.22 | 16.71 |
| TraesCS6A01G273700.1 | Wheat | nucleus | 30.81 | 12.26 |
Protein Annotations
| EnsemblPlants:TraesCS3A01G308700.1 | EnsemblPlantsGene:TraesCS3A01G308700 | Gene3D:1.10.10.60 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR006456 | InterPro:ZF_HD_homeobox_Cys/His_dimer | PANTHER:PTHR31948 | PFAM:PD125774 |
| PFAM:PF04770 | PFscan:PS51523 | SUPFAM:SSF46689 | TIGRFAMs:TIGR01566 | MapMan:15.5.3.13 | : |
Description
No Description!
Coordinates
chr3A:-:546717735..546718511
Molecular Weight (calculated)
20893.8 Da
IEP (calculated)
8.078
GRAVY (calculated)
-0.952
Length
185 amino acids
Sequence
(BLAST)
(BLAST)
001: MDVKCPNGSV KKVRQAAPGV EEETYVECGR NHALASGGHV VDGCGEWMPL GDHNPADMSS YKCAACGCHR NFHRKVMTER SPPPPPMAAT VLHGLPQRRE
101: KMLEDQLPGV DSDTDSDGTE YDSDATEKRS RTMFTADQKL RMQELSEHLG RRLQKRDKDI IEARCHDISI SKNVFRNWMN NKKRK
101: KMLEDQLPGV DSDTDSDGTE YDSDATEKRS RTMFTADQKL RMQELSEHLG RRLQKRDKDI IEARCHDISI SKNVFRNWMN NKKRK
001: MDVIATTTTI VSDLDSRQPE IEAPIRIQPA KPISFSNGKR CHHHHLASEA VAVATYKECL KNHAAGIGGH ALDGCGEFMP SPSFNSNDPA SLTCAACGCH
101: RNFHRREEDP SSLSAIVPAI EFRPHNRHQL PPPPPPHLAG IRSPDDDDSA SPPPISSSYM LLALSGGRGG ANTAVPMSRK RFRTKFSQYQ KEKMFEFSER
201: VGWRMPKADD VVVKEFCREI GVDKSVFKVW MHNNKISGRS GARRANGGVV VGGVGDSRQS VVPTNGSFSS T
101: RNFHRREEDP SSLSAIVPAI EFRPHNRHQL PPPPPPHLAG IRSPDDDDSA SPPPISSSYM LLALSGGRGG ANTAVPMSRK RFRTKFSQYQ KEKMFEFSER
201: VGWRMPKADD VVVKEFCREI GVDKSVFKVW MHNNKISGRS GARRANGGVV VGGVGDSRQS VVPTNGSFSS T
Arabidopsis Description
ZHD8Zinc-finger homeodomain protein 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXG0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.