Subcellular Localization
min:
: max
Winner_takes_all: cytosol, plastid
Predictor Summary:
Predictor Summary:
- cytosol 2
- extracellular 1
- golgi 1
- plasma membrane 1
- endoplasmic reticulum 1
- vacuole 1
- plastid 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1B01G215100.1 | Wheat | cytosol, plastid | 96.92 | 95.94 |
| TraesCS1D01G204100.1 | Wheat | cytosol, plastid | 95.38 | 94.42 |
| Os10t0537400-00 | Rice | cytosol | 69.74 | 73.51 |
| GSMUA_Achr11P... | Banana | cytosol | 42.05 | 62.12 |
| KXG39011 | Sorghum | cytosol | 63.59 | 59.62 |
| VIT_02s0025g03010.t01 | Wine grape | cytosol, mitochondrion | 41.03 | 56.34 |
| TraesCS5A01G516900.1 | Wheat | plastid | 50.26 | 50.26 |
| GSMUA_Achr11P... | Banana | cytosol | 46.15 | 48.65 |
| PGSC0003DMT400079287 | Potato | cytosol | 23.59 | 47.42 |
| GSMUA_Achr2P10220_001 | Banana | mitochondrion, plastid | 45.64 | 46.6 |
| GSMUA_Achr1P00790_001 | Banana | cytosol | 46.67 | 46.43 |
| KRG92555 | Soybean | cytosol | 42.05 | 46.07 |
| KRH34236 | Soybean | cytosol | 41.03 | 44.94 |
| AT4G10465.1 | Thale cress | plastid | 41.03 | 43.72 |
| Solyc08g075880.2.1 | Tomato | endoplasmic reticulum, plastid | 40.0 | 43.58 |
| CDX85985 | Canola | mitochondrion | 26.67 | 43.33 |
| AT2G18196.1 | Thale cress | plastid | 39.49 | 43.26 |
| Bra037919.1-P | Field mustard | plastid | 40.0 | 42.86 |
| CDX86861 | Canola | plastid | 40.0 | 42.86 |
| CDX99542 | Canola | plastid | 40.0 | 42.86 |
| CDX67533 | Canola | cytosol | 38.97 | 42.7 |
| CDY13354 | Canola | cytosol | 38.97 | 42.7 |
| Bra028528.1-P | Field mustard | cytosol | 38.97 | 42.7 |
| PGSC0003DMT400012844 | Potato | plastid | 40.0 | 42.39 |
| PGSC0003DMT400079324 | Potato | endoplasmic reticulum | 38.97 | 42.22 |
| TraesCS6A01G259700.1 | Wheat | mitochondrion | 26.67 | 36.36 |
| TraesCS5A01G244000.1 | Wheat | cytosol | 27.69 | 35.53 |
| TraesCS3A01G206100.1 | Wheat | cytosol | 26.15 | 33.77 |
| TraesCS2A01G287200.1 | Wheat | cytosol | 25.64 | 33.11 |
| TraesCS4A01G211400.1 | Wheat | mitochondrion, plastid | 24.62 | 32.43 |
| TraesCS2A01G160700.1 | Wheat | cytosol | 26.15 | 31.48 |
| TraesCS5A01G191400.1 | Wheat | cytosol | 25.13 | 30.62 |
| TraesCS2A01G064900.1 | Wheat | nucleus | 23.08 | 29.03 |
| TraesCS7A01G345500.1 | Wheat | cytosol | 24.1 | 28.66 |
| TraesCS6A01G043000.1 | Wheat | cytosol | 22.05 | 27.04 |
| TraesCS7A01G382700.1 | Wheat | mitochondrion, plastid | 20.51 | 24.84 |
Protein Annotations
| Gene3D:3.30.70.100 | MapMan:35.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0006810 | GO:GO:0008150 |
| GO:GO:0030001 | GO:GO:0046872 | InterPro:HMA_dom | InterPro:HMA_dom_sf | InterPro:IPR006121 | PFAM:PF00403 |
| PFscan:PS50846 | PANTHER:PTHR22814 | PANTHER:PTHR22814:SF141 | SUPFAM:SSF55008 | EnsemblPlantsGene:TraesCS1A01G200700 | EnsemblPlants:TraesCS1A01G200700.1 |
| TIGR:cd00371 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr1A:+:361235503..361236220
Molecular Weight (calculated)
21343.2 Da
IEP (calculated)
9.536
GRAVY (calculated)
-0.591
Length
195 amino acids
Sequence
(BLAST)
(BLAST)
001: MADLVSDVLL SFFCCCFYPP GGHHDTRHYR GHPAGRSSAH RHHHGAAGRT VASRSRPALS LQTVELKVRM CCDGCERAVM QSLVNLRGVD SVEVDAGTGK
101: VRVTGYVERG KVLREVRRRS GKKADFWPSG GTPLRFASPG GCFGGSEPYR DTYSYHRRGY GDGGDRHGRA RRPARGSDAV SNMFNDDDVN ACAIM
101: VRVTGYVERG KVLREVRRRS GKKADFWPSG GTPLRFASPG GCFGGSEPYR DTYSYHRRGY GDGGDRHGRA RRPARGSDAV SNMFNDDDVN ACAIM
001: MSSLIVKSLG SIVSIIARIF FFRRSRPVSN PRTTAHISYF RMSRKRPLSL QTVELKVRMC CTGCVRIVRN AISKLRGVDS VEVDKELGRV RVVGYVDRNK
101: VLKAVRRAGK RAEFSPYPEP PLYFTSTQNY FVDPSKEFKE SYNYYRHGYN GTEQHGNIPV GSRGDDRVSN MFNDDNVNAC RLM
101: VLKAVRRAGK RAEFSPYPEP PLYFTSTQNY FVDPSKEFKE SYNYYRHGYN GTEQHGNIPV GSRGDDRVSN MFNDDNVNAC RLM
Arabidopsis Description
HIPP44Heavy metal-associated isoprenylated plant protein 44 [Source:UniProtKB/Swiss-Prot;Acc:F4JMB8]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.