CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 4
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG89637
KRH50585
KRH70724
KRH74865

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G18196.1	KRG89637	AT5G15210.1	18974936
AT2G18196.1	KRH50585	AT5G15210.1	18974936
AT2G18196.1	KRH70724	AT5G15210.1	18974936
AT2G18196.1	KRH74865	AT5G15210.1	18974936

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG92555	Soybean	cytosol	97.19	97.19
VIT_02s0025g03010.t01	Wine grape	cytosol, mitochondrion	64.04	80.28
PGSC0003DMT400079287	Potato	cytosol	40.45	74.23
GSMUA_Achr11P...	Banana	cytosol	52.81	71.21
AT2G18196.1	Thale cress	plastid	68.54	68.54
CDY13354	Canola	cytosol	67.42	67.42
CDX67533	Canola	cytosol	67.42	67.42
Bra028528.1-P	Field mustard	cytosol	67.42	67.42
PGSC0003DMT400079324	Potato	endoplasmic reticulum	66.85	66.11
Solyc08g075880.2.1	Tomato	endoplasmic reticulum, plastid	66.29	65.92
AT4G10465.1	Thale cress	plastid	66.29	64.48
CDX86861	Canola	plastid	65.17	63.74
CDX99542	Canola	plastid	65.17	63.74
Bra037919.1-P	Field mustard	plastid	64.61	63.19
CDX85985	Canola	mitochondrion	42.13	62.5
GSMUA_Achr11P...	Banana	cytosol	61.24	58.92
Os03t0120400-01	Rice	plastid	60.67	55.96
GSMUA_Achr1P00790_001	Banana	cytosol	60.67	55.1
GSMUA_Achr2P10220_001	Banana	mitochondrion, plastid	58.99	54.97
TraesCS5A01G516900.1	Wheat	plastid	59.55	54.36
TraesCS4D01G343300.1	Wheat	plastid	59.55	54.36
TraesCS4B01G348900.1	Wheat	plastid	59.55	54.36
EER92967	Sorghum	plastid	58.99	54.12
Zm00001d027405_P001	Maize	plastid	56.74	52.06
Os10t0537400-00	Rice	cytosol	49.44	47.57
KRG93769	Soybean	cytosol	25.28	46.39
KRG93786	Soybean	cytosol, plastid	24.72	45.36
KRH76245	Soybean	cytosol	21.91	44.32
KRH58951	Soybean	cytosol	34.83	44.29
KRH15973	Soybean	cytosol, plastid	26.97	44.04
KRH57823	Soybean	cytosol	35.96	43.24
KRG93169	Soybean	cytosol	34.27	42.36
KRG90986	Soybean	cytosol, plastid	34.27	41.78
TraesCS1D01G204100.1	Wheat	cytosol, plastid	46.07	41.62
KXG39011	Sorghum	cytosol	48.31	41.35
TraesCS1B01G215100.1	Wheat	cytosol, plastid	45.51	41.12
KRH35768	Soybean	cytosol, plastid	33.71	41.1
TraesCS1A01G200700.1	Wheat	cytosol, plastid	44.94	41.03
KRH38224	Soybean	cytosol	33.71	40.82
KRH70455	Soybean	cytosol	32.58	40.0
KRH01671	Soybean	cytosol	32.58	40.0
KRH28829	Soybean	cytosol	26.97	39.67
KRH59402	Soybean	cytosol	33.15	38.56
KRH43240	Soybean	cytosol	33.15	38.56
KRH24318	Soybean	cytosol, nucleus, plastid	18.54	38.37
KRH22286	Soybean	cytosol	29.78	37.32
KRH27043	Soybean	cytosol	29.78	37.32
KRH38480	Soybean	cytosol	24.72	36.97
HORVU4Hr1G085090.2	Barley	plastid	58.43	36.36
KRH62410	Soybean	cytosol, plastid	30.34	36.24
KRH09015	Soybean	cytosol	28.09	36.23
KRH31264	Soybean	cytosol	31.46	36.13
KRH53129	Soybean	cytosol	29.78	35.57
KRH29001	Soybean	cytosol	30.34	34.62
KRG97609	Soybean	cytosol	29.78	33.76
KRH60697	Soybean	cytosol	28.09	32.47
KRH38229	Soybean	cytosol	26.4	31.97

Protein Annotations

EntrezGene:100806253	Gene3D:3.30.70.100	MapMan:35.1	EMBL:ACUP02006587	EnsemblPlantsGene:GLYMA_10G171800	GO:GO:0003674
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006810
GO:GO:0008150	GO:GO:0009987	GO:GO:0019725	GO:GO:0030001	GO:GO:0046872	GO:GO:0046914
GO:GO:0046916	InterPro:HMA_dom	InterPro:HMA_dom_sf	InterPro:IPR006121	UniProt:K7LJY4	EnsemblPlants:KRH34236
ProteinID:KRH34236	ProteinID:KRH34236.1	PFAM:PF00403	PFscan:PS50846	PANTHER:PTHR22814	PANTHER:PTHR22814:SF280
SUPFAM:SSF55008	UniParc:UPI000233CF49	:	:	:	:

Description

hypothetical protein

Coordinates

chr10:-:40542750..40545783

Molecular Weight (calculated)

20683.8 Da

IEP (calculated)

9.436

GRAVY (calculated)

-0.598

Length

178 amino acids

Sequence
(BLAST)

001: MASLLQKAFG SEISSFIYRL FIYQDHNKGI PRNFKMPKKG RPLSLQTVEL KVRMCCTGCE RVVKNAIYKL KGIDSVEVDL EMERVTVGGY VDRNKVLKAV
101: RRAGKRAEFW PYPNPPLYFT TADHYFKDTA HEFKESYNYY RHGYNLPERH GTMHVSHRGD DNVSNMFNDD NVNACSIM

Best Arabidopsis Sequence Match ( AT2G18196.1 )
(BLAST)

001: MGFGSFISTI TYCLFFRYPH KKPKFKSVSH LNHYHTMPMA RPLSLQTIDL KVRMCCSGCE RVVKHAIYKL RGVDSVEVNL EMERVTVVGY VERKKVLKAV
101: RRAGKRAEFW PYPDMPRYFT SSDHYFKDTT REFRESYNYY RHGYNLSDRH GNIHVTNRGD DKMSNFFNDD NVHACSLM

Arabidopsis Description

HIPP30Heavy metal-associated isoprenylated plant protein 30 [Source:UniProtKB/Swiss-Prot;Acc:F4IQG4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.