CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
extracellular 2
cytosol 1
nucleus 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	plastid
EpiLoc:	extracellular
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
EES15050
KXG35632
OQU86730

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G18196.1	EES15050	AT5G15210.1	18974936
AT2G18196.1	KXG35632	AT5G15210.1	18974936
AT2G18196.1	OQU86730	AT5G15210.1	18974936

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d027405_P001	Maize	plastid	93.81	93.81
Os03t0120400-01	Rice	plastid	85.05	85.49
TraesCS4B01G348900.1	Wheat	plastid	84.02	83.59
TraesCS5A01G516900.1	Wheat	plastid	82.99	82.56
TraesCS4D01G343300.1	Wheat	plastid	82.99	82.56
GSMUA_Achr11P...	Banana	cytosol	55.15	81.06
VIT_02s0025g03010.t01	Wine grape	cytosol, mitochondrion	51.03	69.72
PGSC0003DMT400079287	Potato	cytosol	34.02	68.04
GSMUA_Achr11P...	Banana	cytosol	59.79	62.7
GSMUA_Achr1P00790_001	Banana	cytosol	62.89	62.24
GSMUA_Achr2P10220_001	Banana	mitochondrion, plastid	60.82	61.78
Solyc08g075880.2.1	Tomato	endoplasmic reticulum, plastid	55.67	60.34
PGSC0003DMT400079324	Potato	endoplasmic reticulum	55.15	59.44
KRH34236	Soybean	cytosol	54.12	58.99
KRG92555	Soybean	cytosol	53.61	58.43
AT2G18196.1	Thale cress	plastid	53.09	57.87
Bra028528.1-P	Field mustard	cytosol	52.58	57.3
CDX67533	Canola	cytosol	52.58	57.3
CDY13354	Canola	cytosol	52.58	57.3
HORVU4Hr1G085090.2	Barley	plastid	81.96	55.59
PGSC0003DMT400012844	Potato	plastid	52.06	54.89
Bra037919.1-P	Field mustard	plastid	50.52	53.85
CDX86861	Canola	plastid	50.52	53.85
CDX99542	Canola	plastid	50.52	53.85
AT4G10465.1	Thale cress	plastid	50.52	53.55
KXG39011	Sorghum	cytosol	55.67	51.92
CDX85985	Canola	mitochondrion	31.96	51.67
OQU85626	Sorghum	mitochondrion	33.51	39.39
EES14354	Sorghum	cytosol	29.9	38.41
EER96651	Sorghum	cytosol	29.9	36.02
EES13808	Sorghum	cytosol	25.77	34.48
EES11880	Sorghum	cytosol	26.8	33.55
EER99736	Sorghum	cytosol	28.87	33.33
EER92834	Sorghum	cytosol	26.8	33.33
KXG30743	Sorghum	plastid	28.87	31.64
EES03638	Sorghum	cytosol	24.74	29.81
EER89887	Sorghum	cytosol	24.74	23.76

Protein Annotations

Gene3D:3.30.70.100	MapMan:35.1	EntrezGene:8077974	UniProt:C5X0X3	EnsemblPlants:EER92967	ProteinID:EER92967
ProteinID:EER92967.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006810	GO:GO:0008150	GO:GO:0009987	GO:GO:0019725	GO:GO:0030001
GO:GO:0046872	GO:GO:0046914	GO:GO:0046916	InterPro:HMA_dom	InterPro:HMA_dom_sf	InterPro:IPR006121
PFAM:PF00403	PFscan:PS50846	PANTHER:PTHR22814	PANTHER:PTHR22814:SF141	EnsemblPlantsGene:SORBI_3001G528300	SUPFAM:SSF55008
unigene:Sbi.8051	UniParc:UPI0001A8265B	RefSeq:XP_002465969.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr1:+:79243058..79245509

Molecular Weight (calculated)

22197.0 Da

IEP (calculated)

8.563

GRAVY (calculated)

-0.714

Length

194 amino acids

Sequence
(BLAST)

001: MSVSSSLSNF LLCCFYPSAG HRHGHRGGAY YYSSHPTSAN TLYYHEGPFA GRRMGRSSRP LSLQTVELKV RMCCSGCERV VKHAVSRLRG VDSVEVDVEM
101: EKVTVTGYVD RHRVLKEVRR AGKKAEFWPN PDLPLHFTSA KDYFHDEESY RRTYNYYRHG YNGDKHGQLH EPHRGADPVS NMFNDDDVNA CSIM

Best Arabidopsis Sequence Match ( AT2G18196.1 )
(BLAST)

001: MGFGSFISTI TYCLFFRYPH KKPKFKSVSH LNHYHTMPMA RPLSLQTIDL KVRMCCSGCE RVVKHAIYKL RGVDSVEVNL EMERVTVVGY VERKKVLKAV
101: RRAGKRAEFW PYPDMPRYFT SSDHYFKDTT REFRESYNYY RHGYNLSDRH GNIHVTNRGD DKMSNFFNDD NVHACSLM

Arabidopsis Description

HIPP30Heavy metal-associated isoprenylated plant protein 30 [Source:UniProtKB/Swiss-Prot;Acc:F4IQG4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.