CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
EER92967
EER96888
EES15050
EES15144
KXG23238
KXG28111
KXG30914
KXG35632
KXG39011
OQU78488
OQU86730

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G15210.1	KXG23238	AT1G14440.1	16428600
AT5G15210.1	KXG28111	AT1G14440.1	16428600
AT5G15210.1	KXG30914	AT1G75240.1	16428600
AT5G15210.1	OQU78488	AT1G75240.1	16428600
AT5G15210.1	EER92967	AT2G18196.1	18974936
AT5G15210.1	KXG39011	AT2G18196.1	18974936
AT5G15210.1	KXG30914	AT3G50890.1	16428600
AT5G15210.1	OQU78488	AT3G50890.1	16428600
AT5G15210.1	EES15050	AT5G15210.1	16428600
AT5G15210.1	KXG35632	AT5G15210.1	16428600
AT5G15210.1	OQU86730	AT5G15210.1	16428600
AT5G15210.1	EES15050	AT5G15210.1	21245844
AT5G15210.1	KXG35632	AT5G15210.1	21245844
AT5G15210.1	OQU86730	AT5G15210.1	21245844
AT5G15210.1	EER96888	AT5G65410.1	16428600
AT5G15210.1	EES15144	AT5G65410.1	16428600

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d020460_P001	Maize	nucleus	85.83	88.38
TraesCS5A01G227100.1	Wheat	nucleus	63.25	62.92
TraesCS5B01G225700.1	Wheat	nucleus	64.3	62.82
TraesCS5D01G234600.1	Wheat	nucleus	63.52	62.53
HORVU5Hr1G065740.1	Barley	nucleus	62.99	62.18
EES15050	Sorghum	cytosol	52.76	51.54
TraesCS3A01G308700.1	Wheat	nucleus	21.26	43.78
VIT_01s0026g02460.t01	Wine grape	nucleus	25.72	42.61
EES16563	Sorghum	cytosol	10.24	42.39
TraesCS1D01G064300.1	Wheat	mitochondrion	18.9	41.62
AT5G15210.1	Thale cress	nucleus	29.13	40.96
PGSC0003DMT400080288	Potato	nucleus	30.45	40.42
Solyc05g007580.1.1	Tomato	nucleus	30.97	39.73
Bra008712.1-P	Field mustard	cytosol	26.77	38.78
CDX69541	Canola	nucleus	26.77	38.78
EES07913	Sorghum	cytosol	9.97	38.78
KRH70724	Soybean	nucleus	28.61	37.46
HORVU1Hr1G013140.1	Barley	cytosol	7.35	37.33
KRH74865	Soybean	nucleus	28.35	36.49
CDX85059	Canola	nucleus	22.31	35.71
TraesCS1A01G087700.1	Wheat	nucleus	25.98	34.62
TraesCS1B01G106800.1	Wheat	nucleus	25.98	34.14
OQU86730	Sorghum	nucleus	23.1	33.21
KRG89637	Soybean	nucleus	15.75	32.97
EER93559	Sorghum	cytosol, mitochondrion, nucleus	20.21	32.91
KRH50585	Soybean	nucleus	29.4	31.28
KXG35630	Sorghum	nucleus	8.66	30.0
EER96888	Sorghum	nucleus	23.36	29.47
KXG25227	Sorghum	mitochondrion	9.45	28.35
EES15144	Sorghum	nucleus	22.57	27.65
KXG23238	Sorghum	nucleus	22.83	26.52
KXG28111	Sorghum	nucleus	24.41	23.6
OQU78488	Sorghum	plastid	22.31	22.79
KXG30914	Sorghum	nucleus	23.36	21.92

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.13	UniProt:A0A1B6QCI2	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:Homeodomain_ZF_HD	InterPro:IPR006456	EnsemblPlants:KXG35632	ProteinID:KXG35632
ProteinID:KXG35632.1	PFAM:PD125774	PFAM:PF04770	PFscan:PS51523	PANTHER:PTHR31948	PANTHER:PTHR31948:SF48
EnsemblPlantsGene:SORBI_3002G201400	SUPFAM:SSF46689	TIGRFAMs:TIGR01565	TIGRFAMs:TIGR01566	UniParc:UPI00081ADA60	InterPro:ZF_HD_homeobox_Cys/His_dimer
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:-:59137193..59139344

Molecular Weight (calculated)

39389.2 Da

IEP (calculated)

7.925

GRAVY (calculated)

-0.504

Length

381 amino acids

Sequence
(BLAST)

001: MEAMDVKYKP VMFPNGAALK KAVKPAAVAP AGEPLYRECL KNHAASLGGH AVDGCGEFMP SPGANPADPT SLKCAACGCH RNFHRRTLEG SPPPPHAPAP
101: LALPPPASVL MHGHPHRGGE ETPEDRHHPG VVDADDSDSD SEGSEYDEER SVSPPPPPHA PSHHHVPAPV AQQPPPYFAT APHMLLSLGS GGAPGAAVAA
201: AASAAQRLQA PAPQQLTPSS APPGPGGVGA MPMPRKRFRT KFTAEQKQRM QELSERLGWR LQKRDEAIVD EWCRDIGVGK GVFKVWMHNN KHNFLGGHSA
301: RRSASASASA GACAPLQTPG GAAAPSSFNP SRITPPPPVL TSSPTSATGF NINGAASSAP TVVTADHTDN AANGASSPQS A

Best Arabidopsis Sequence Match ( AT1G69600.1 )
(BLAST)

001: MDLSSKPQQQ LLNSLPIAGE LTVTGEMGVC YKECLKNHAA NLGGHALDGC GEFMPSPTAT STDPSSLRCA ACGCHRNFHR RDPSENLNFL TAPPISSPSG
101: TESPPSRHVS SPVPCSYYTS APPHHVILSL SSGFPGPSDQ DPTVVRSENS SRGAMRKRTR TKFTPEQKIK MRAFAEKAGW KINGCDEKSV REFCNEVGIE
201: RGVLKVWMHN NKYSLLNGKI REIEHGLCLN THSNDGDGSS SS

Arabidopsis Description

ZHD11Zinc-finger homeodomain protein 11 [Source:UniProtKB/Swiss-Prot;Acc:Q9SEZ1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.