CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
mitochondrion 6
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	secretory
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	mitochondrion

PPI

Inferred distinct locusB in Crop

locusB	locations
EES15050
KXG35632
OQU86730

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G74660.1	EES15050	AT5G15210.1	21245844
AT1G74660.1	KXG35632	AT5G15210.1	21245844
AT1G74660.1	OQU86730	AT5G15210.1	21245844

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d032177_P001	Maize	mitochondrion	81.1	86.55
Zm00001d050452_P001	Maize	mitochondrion	81.1	81.1
Os08t0438100-01	Rice	cytosol	58.27	79.57
KRH56913	Soybean	cytosol	33.86	54.43
KRH03476	Soybean	cytosol	33.86	54.43
EES16563	Sorghum	cytosol	39.37	54.35
GSMUA_Achr6P30650_001	Banana	mitochondrion	40.16	53.68
AT3G28917.1	Thale cress	mitochondrion	41.73	53.0
KRH18477	Soybean	cytosol, mitochondrion	33.07	51.22
KRH54551	Soybean	cytosol, mitochondrion	35.43	50.56
KRH63346	Soybean	cytosol, mitochondrion	35.43	50.56
KXG35630	Sorghum	nucleus	43.31	50.0
EES07913	Sorghum	cytosol	37.8	48.98
AT1G18835.1	Thale cress	mitochondrion	33.86	48.86
KRG93529	Soybean	cytosol, mitochondrion	37.01	48.45
GSMUA_AchrUn_...	Banana	cytosol	35.43	48.39
AT1G74660.1	Thale cress	mitochondrion	35.43	44.12
VIT_08s0056g01130.t01	Wine grape	nucleus	37.8	35.56
CDY46298	Canola	cytosol	14.17	21.43
Bra039615.1-P	Field mustard	cytosol	29.92	20.99
EES15144	Sorghum	nucleus	37.8	15.43
EER96888	Sorghum	nucleus	33.86	14.24
EER93559	Sorghum	cytosol, mitochondrion, nucleus	22.05	11.97
KXG23238	Sorghum	nucleus	27.56	10.67
KXG28111	Sorghum	nucleus	31.5	10.15
OQU86730	Sorghum	nucleus	20.47	9.81
PGSC0003DMT400044269	Potato	nucleus	32.28	9.79
KXG35632	Sorghum	nucleus	28.35	9.45
OQU78488	Sorghum	plastid	26.77	9.12
KXG30914	Sorghum	nucleus	29.13	9.11
EES15050	Sorghum	cytosol	27.56	8.97
Solyc09g089550.2.1	Tomato	nucleus	35.43	5.59
PGSC0003DMT400044270	Potato	cytosol	34.65	5.43

Protein Annotations

EnsemblPlants:KXG25227	EnsemblPlantsGene:SORBI_3007G139000	InterPro:IPR006456	InterPro:ZF_HD_homeobox_Cys/His_dimer	PANTHER:PTHR31948	PANTHER:PTHR31948:SF27
PFAM:PD125774	PFAM:PF04770	PFscan:PS51257	PFscan:PS51523	ProteinID:KXG25227	ProteinID:KXG25227.1
SEG:seg	TIGRFAMs:TIGR01566	UniParc:UPI00081AD9BD	UniProt:A0A1B6PHY4	MapMan:15.5.3.13	:

Description

hypothetical protein

Coordinates

chr7:-:56694777..56697367

Molecular Weight (calculated)

13311.8 Da

IEP (calculated)

7.726

GRAVY (calculated)

-0.156

Length

127 amino acids

Sequence
(BLAST)

001: MKRMVILRRC HPPPPPAVLF GGCCRSAGGV RYGECRRNHA ASMGGHAVDG CREFLAEGEE GTTAALRCAA CGCHRSFHRR MVVPRCCCCF CCDGGADDAA
101: AVAAAATGRL WDDDCSPESS ASSTTPS

Best Arabidopsis Sequence Match ( AT3G28917.1 )
(BLAST)

1: MRKRQVVLRR ASPEEPSRSS STASSLTVRT VRYGECQKNH AAAVGGYAVD GCREFMASRG EEGTVAALTC AACGCHRSFH RREIETEVVC DCNSPPSTGN

Arabidopsis Description

MIF2Mini zinc finger protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LJW5]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.