CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
plastid 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER96888
EES15050
EES15144
KXG23238
KXG28111
KXG30914
KXG35632
OQU78488
OQU86730

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G75240.1	KXG23238	AT1G14440.1	16428600
AT1G75240.1	KXG28111	AT1G14440.1	16428600
AT1G75240.1	KXG30914	AT1G75240.1	16428600
AT1G75240.1	OQU78488	AT1G75240.1	16428600
AT1G75240.1	KXG30914	AT3G50890.1	16428600
AT1G75240.1	OQU78488	AT3G50890.1	16428600
AT1G75240.1	EES15050	AT5G15210.1	16428600
AT1G75240.1	KXG35632	AT5G15210.1	16428600
AT1G75240.1	OQU86730	AT5G15210.1	16428600
AT1G75240.1	EER96888	AT5G65410.1	16428600
AT1G75240.1	EES15144	AT5G65410.1	16428600
AT2G18350.1	KXG23238	AT1G14440.1	16428600
AT2G18350.1	KXG28111	AT1G14440.1	16428600
AT2G18350.1	EER96888	AT5G65410.1	16428600
AT2G18350.1	EES15144	AT5G65410.1	16428600
AT3G50890.1	KXG23238	AT1G14440.1	16428600
AT3G50890.1	KXG28111	AT1G14440.1	16428600
AT3G50890.1	KXG30914	AT1G75240.1	16428600
AT3G50890.1	OQU78488	AT1G75240.1	16428600
AT3G50890.1	EES15050	AT5G15210.1	16428600
AT3G50890.1	KXG35632	AT5G15210.1	16428600
AT3G50890.1	OQU86730	AT5G15210.1	16428600
AT3G50890.1	EER96888	AT5G65410.1	16428600
AT3G50890.1	EES15144	AT5G65410.1	16428600

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d009674_P001	Maize	nucleus	55.76	87.03
Os05t0579300-01	Rice	nucleus	47.72	69.8
HORVU1Hr1G091470.1	Barley	nucleus	38.87	61.7
TraesCS1A01G418600.1	Wheat	nucleus	37.0	61.33
TraesCS1D01G426300.1	Wheat	nucleus	41.02	61.2
TraesCS1B01G448600.1	Wheat	nucleus	41.29	61.11
TraesCS3A01G226100.1	Wheat	nucleus	35.39	56.17
TraesCS3D01G224100.1	Wheat	nucleus	35.12	55.51
TraesCS3B01G258400.1	Wheat	nucleus	34.05	54.74
Os01t0635550-00	Rice	nucleus	32.71	52.59
EES16563	Sorghum	cytosol	9.38	38.04
CDX77960	Canola	nucleus	20.38	34.7
Bra036852.1-P	Field mustard	nucleus	20.38	34.7
CDX73775	Canola	nucleus	19.84	34.42
EES07913	Sorghum	cytosol	8.85	33.67
CDX90679	Canola	nucleus	21.72	33.33
AT3G50890.1	Thale cress	nucleus	21.98	32.93
EER93559	Sorghum	cytosol, mitochondrion, nucleus	20.64	32.91
Solyc04g080490.2.1	Tomato	nucleus	25.2	32.41
PGSC0003DMT400009581	Potato	nucleus	24.66	32.39
CDY28987	Canola	nucleus	20.91	31.84
CDY37252	Canola	nucleus	21.98	31.42
CDY62531	Canola	nucleus	21.98	31.18
CDY70550	Canola	nucleus	20.91	30.35
AT2G18350.1	Thale cress	nucleus	21.18	30.15
EER96888	Sorghum	nucleus	24.4	30.13
KXG23238	Sorghum	nucleus	26.27	29.88
CDY70108	Canola	nucleus	21.18	29.81
Bra037224.1-P	Field mustard	nucleus	20.91	29.43
KXG30914	Sorghum	nucleus	31.9	29.31
EES15144	Sorghum	nucleus	24.4	29.26
CDX85886	Canola	nucleus	22.52	28.57
Bra015857.1-P	Field mustard	nucleus	23.06	28.48
CDY45419	Canola	nucleus	21.98	28.47
CDX73152	Canola	nucleus	22.79	28.43
CDY71124	Canola	nucleus	19.57	28.4
KRH76785	Soybean	nucleus	24.13	28.39
Bra003759.1-P	Field mustard	nucleus	22.25	28.23
KXG35630	Sorghum	nucleus	8.31	28.18
VIT_18s0001g12580.t01	Wine grape	nucleus	23.86	28.16
Solyc02g085160.1.1	Tomato	nucleus	21.98	27.99
CDX68137	Canola	nucleus	22.25	27.95
Bra008185.1-P	Field mustard	nucleus	21.98	27.89
KRH08258	Soybean	nucleus	24.13	27.36
KRH69909	Soybean	nucleus	24.13	26.95
PGSC0003DMT400009033	Potato	nucleus	21.72	26.82
Bra012882.1-P	Field mustard	nucleus	19.03	26.79
OQU86730	Sorghum	nucleus	19.03	26.79
KXG25227	Sorghum	mitochondrion	9.12	26.77
AT1G75240.1	Thale cress	nucleus	21.98	26.54
KRH28682	Soybean	nucleus	23.32	25.89
GSMUA_Achr3P19060_001	Banana	nucleus	16.62	25.83
GSMUA_Achr6P24230_001	Banana	nucleus	15.28	25.56
KXG28111	Sorghum	nucleus	24.4	23.1
EES15050	Sorghum	cytosol	23.86	22.82
KXG35632	Sorghum	nucleus	22.79	22.31
VIT_04s0023g01880.t01	Wine grape	nucleus	22.79	19.63

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.13	UniProt:A0A1Z5R3W7	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:Homeodomain_ZF_HD	InterPro:IPR006456	EnsemblPlants:OQU78488	ProteinID:OQU78488
ProteinID:OQU78488.1	PFAM:PD125774	PFAM:PF04770	PFscan:PS51523	PANTHER:PTHR31948	PANTHER:PTHR31948:SF30
EnsemblPlantsGene:SORBI_3009G244200	SUPFAM:SSF46689	TIGRFAMs:TIGR01565	TIGRFAMs:TIGR01566	UniParc:UPI000B8BAFE5	InterPro:ZF_HD_homeobox_Cys/His_dimer
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr9:+:58020542..58023140

Molecular Weight (calculated)

39708.4 Da

IEP (calculated)

8.606

GRAVY (calculated)

-0.819

Length

373 amino acids

Sequence
(BLAST)

001: MGTGRGSPIP APGCPLSVAA LHHRHRGPPE TKAPFPSPGT GKQPGTTTAP VPSSPSPQAV TVTASGSPCV LRHRRAGAAA PAFLGQEEEE QEQEEEEPVS
101: EEMGASSAPP PALAPAPASA SASASGHQNH AAEARYHECL RNHAAALGGH VVDGCGEFMP GGDGDRLKCA ACGCHRSFHR KDDARRRHQL LLPAPAPPVL
201: SPTTPAPRVP LLLPPPHPHY AAGAAVAHPH YVPPPFPYHG TPSGSGGGTT TESSSEERGP PSGPSAAAAA HAQGHVRRKR FRTKFTPEQK EQMLAFAERL
301: GWRMQKQDDA LVQHFCDQVG VRRQVFKVWM HNNKHTGSGG RRQLPQPQEQ QQPQQQPPQT QTQAHQQQPQ QEQ

Best Arabidopsis Sequence Match ( AT2G02540.1 )
(BLAST)

001: MEIASQEDPI PINTSYGNSG GGHGNMNHHH HANSAPSSLN ITTSNPLLVS SNSNGLGKNH DHSHHHHVGY NIMVTNIKKE KPVVIKYKEC LKNHAATMGG
101: NAIDGCGEFM PSGEEGSIEA LTCSVCNCHR NFHRRETEGE EKTFFSPYLN HHQPPPQQRK LMFHHKMIKS PLPQQMIMPI GVTTAGSNSE SEDLMEEEGG
201: GSLTFRQPPP PPSPYSYGHN QKKRFRTKFT QEQKEKMISF AERVGWKIQR QEESVVQQLC QEIGIRRRVL KVWMHNNKQN LSKKSNNVSN NVDLSAGNND
301: ITENLASTNP

Arabidopsis Description

ZHD3Zinc-finger homeodomain protein 3 [Source:UniProtKB/Swiss-Prot;Acc:O64722]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.