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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 5
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:mitochondrion, nucleus
BaCelLo:nucleus
MultiLoc:nucleus
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
Bra004399.1-P
Bra007869.1-P
Bra008185.1-P
Bra008712.1-P
Bra012882.1-P
Bra015857.1-P
Bra024382.1-P
Bra025363.1-P
Bra025644.1-P
Bra026219.1-P
Bra026830.1-P
Bra031859.1-P
Bra036852.1-P
Bra037816.1-P
Bra039038.1-P

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G75240.1 Bra026219.1-P AT1G14440.1 16428600
AT1G75240.1 Bra026830.1-P AT1G14440.1 16428600
AT1G75240.1 Bra004399.1-P AT1G69600.1 16428600
AT1G75240.1 Bra007869.1-P AT1G69600.1 16428600
AT1G75240.1 Bra008185.1-P AT1G75240.1 16428600
AT1G75240.1 Bra015857.1-P AT1G75240.1 16428600
AT1G75240.1 Bra025363.1-P AT3G28920.1 16428600
AT1G75240.1 Bra039038.1-P AT3G28920.1 16428600
AT1G75240.1 Bra012882.1-P AT3G50890.1 16428600
AT1G75240.1 Bra036852.1-P AT3G50890.1 16428600
AT1G75240.1 Bra008712.1-P AT5G15210.1 16428600
AT1G75240.1 Bra025644.1-P AT5G39760.1 16428600
AT1G75240.1 Bra024382.1-P AT5G65410.1 16428600
AT1G75240.1 Bra031859.1-P AT5G65410.1 16428600
AT1G75240.1 Bra037816.1-P AT5G65410.1 16428600
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY62531 Canola nucleus 88.44 98.86
CDY37252 Canola nucleus 87.07 98.08
Bra015857.1-P Field mustard nucleus 89.12 86.75
Bra003759.1-P Field mustard nucleus 83.33 83.33
AT1G75240.1 Thale cress nucleus 86.73 82.52
Bra031051.1-P Field mustard mitochondrion 14.63 48.86
Bra016538.1-P Field mustard mitochondrion 13.95 46.59
Bra025688.1-P Field mustard mitochondrion 13.61 45.45
Bra015898.1-P Field mustard mitochondrion 14.29 44.68
Bra010485.1-P Field mustard nucleus 31.29 43.81
Bra013822.1-P Field mustard nucleus 32.65 42.67
Bra003791.1-P Field mustard mitochondrion 13.61 41.24
Bra039039.1-P Field mustard mitochondrion 13.61 40.82
Bra025362.1-P Field mustard mitochondrion 13.61 40.0
PGSC0003DMT400009581 Potato nucleus 37.41 38.73
Solyc04g080490.2.1 Tomato nucleus 38.1 38.62
Bra037224.1-P Field mustard nucleus 34.35 38.11
Bra036852.1-P Field mustard nucleus 27.89 37.44
Bra037816.1-P Field mustard nucleus 29.93 36.36
TraesCS1A01G418600.1 Wheat nucleus 26.53 34.67
Bra031859.1-P Field mustard nucleus 31.97 34.56
VIT_18s0001g12580.t01 Wine grape nucleus 37.07 34.49
Bra006657.1-P Field mustard nucleus 21.09 34.07
HORVU1Hr1G091470.1 Barley nucleus 26.53 33.19
Bra007869.1-P Field mustard nucleus 25.51 32.61
TraesCS1B01G448600.1 Wheat nucleus 27.89 32.54
Bra004399.1-P Field mustard nucleus 25.51 32.47
Bra024382.1-P Field mustard nucleus 32.31 32.42
Zm00001d009674_P001 Maize nucleus 26.19 32.22
Os05t0579300-01 Rice nucleus 27.89 32.16
Bra026589.1-P Field mustard nucleus 32.31 31.67
TraesCS1D01G426300.1 Wheat nucleus 26.87 31.6
Os01t0635550-00 Rice nucleus 24.49 31.03
Bra026830.1-P Field mustard nucleus 32.99 30.89
Bra026219.1-P Field mustard nucleus 32.31 30.65
TraesCS3B01G258400.1 Wheat nucleus 24.15 30.6
GSMUA_Achr10P... Banana nucleus 26.87 29.81
TraesCS3A01G226100.1 Wheat nucleus 23.81 29.79
TraesCS3D01G224100.1 Wheat nucleus 23.81 29.66
GSMUA_Achr2P23010_001 Banana nucleus 29.25 29.55
Bra008712.1-P Field mustard cytosol 25.85 28.9
GSMUA_Achr3P31090_001 Banana nucleus 26.53 27.56
GSMUA_Achr8P27010_001 Banana nucleus 29.93 27.41
Bra012882.1-P Field mustard nucleus 24.49 27.17
Bra039038.1-P Field mustard nucleus 27.89 26.54
Bra025644.1-P Field mustard nucleus 28.23 26.18
Bra039615.1-P Field mustard cytosol 15.99 25.97
GSMUA_Achr4P14910_001 Banana nucleus 28.91 25.76
GSMUA_Achr4P07850_001 Banana nucleus 28.57 25.38
GSMUA_Achr7P25600_001 Banana nucleus 29.59 25.07
GSMUA_Achr6P24230_001 Banana nucleus 18.71 24.66
Bra025363.1-P Field mustard nucleus 28.57 24.42
Bra027455.1-P Field mustard nucleus 23.47 24.04
GSMUA_Achr3P19060_001 Banana nucleus 18.37 22.5
OQU78488 Sorghum plastid 27.89 21.98
GSMUA_Achr6P27240_001 Banana plastid 28.57 21.88
GSMUA_Achr6P22120_001 Banana nucleus 28.91 21.36
Os02t0706600-00 Rice nucleus 30.95 21.31
KXG30914 Sorghum nucleus 28.57 20.69
Zm00001d017784_P001 Maize nucleus 28.91 20.38
TraesCS6B01G301000.1 Wheat nucleus 30.27 19.31
TraesCS6A01G273700.1 Wheat nucleus 30.27 19.14
TraesCS6D01G253700.1 Wheat nucleus 30.27 19.14
Zm00001d051573_P001 Maize nucleus 28.91 19.06
HORVU6Hr1G069090.1 Barley nucleus 28.23 18.0
HORVU6Hr1G069070.1 Barley plastid 10.88 11.39
Protein Annotations
Gene3D:1.10.10.60MapMan:15.5.3.13EnsemblPlantsGene:Bra008185EnsemblPlants:Bra008185.1EnsemblPlants:Bra008185.1-PGO:GO:0003674
GO:GO:0003676GO:GO:0003677GO:GO:0005488InterPro:Homeobox-like_sfInterPro:Homeodomain_ZF_HDInterPro:IPR006456
UniProt:M4CVD8PFAM:PD125774PFAM:PF04770PFscan:PS51523PANTHER:PTHR31948PANTHER:PTHR31948:SF43
SUPFAM:SSF46689TIGRFAMs:TIGR01565TIGRFAMs:TIGR01566UniParc:UPI0002545B3BInterPro:ZF_HD_homeobox_Cys/His_dimerSEG:seg
Description
AT1G75240 (E=2e-092) AtHB33 | AtHB33 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 33); DNA binding / transcription factor
Coordinates
chrA02:+:13655835..13656719
Molecular Weight (calculated)
32286.8 Da
IEP (calculated)
8.582
GRAVY (calculated)
-0.969
Length
294 amino acids
Sequence
(BLAST)
001: MDMRSHEMIE RRSDDNGNNG AGNISSIITN EDNCNGNNNN NTRVSCNSQT LDHHQSKSSS ISAAAKTTVR YRECLKNHAA NVGGSVHDGC GEFMPSGEEG
101: TLEALRCAAC DCHRNFHRKE VDGVGSSAHH HRHHHQYGGG GGRRPPPPNM MLNPLMLPPP PNYAQMHHHK YGMSPPSGMV TPMSVAYGGG GGGAESSSED
201: LNMYGQSSGE HGGGATVGQM GFSKKRFRTK FTTEQKERMM EFAEKLGWRM NKQDEEELKR FCNDIGVKRQ VFKVWMHNNK SNAKKPTTTT PGTL
Best Arabidopsis Sequence Match ( AT1G75240.1 )
(BLAST)
001: MDMRSHEMIE RRREDNGNNN GGVVISNIIS TNIDDNCNGN NNNTRVSCNS QTLDHHQSKS PSSFSISAAA KPTVRYRECL KNHAASVGGS VHDGCGEFMP
101: SGEEGTIEAL RCAACDCHRN FHRKEMDGVG SSDLISHHRH HHYHHNQYGG GGGRRPPPPN MMLNPLMLPP PPNYQPIHHH KYGMSPPGGG GMVTPMSVAY
201: GGGGGGAESS SEDLNLYGQS SGEGAGAAAG QMAFSMSSSK KRFRTKFTTD QKERMMDFAE KLGWRMNKQD EEELKRFCGE IGVKRQVFKV WMHNNKNNAK
301: KPPTPTTTL
Arabidopsis Description
ZHD5ZHD5 [Source:UniProtKB/TrEMBL;Acc:A0A178WFZ4]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.