Factsheet for HORVU6Hr1G069090.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU1Hr1G013140.1
HORVU1Hr1G091470.1
HORVU4Hr1G015250.6
HORVU5Hr1G065740.1
HORVU5Hr1G069730.1
HORVU6Hr1G069070.1
HORVU6Hr1G069090.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G75240.1	HORVU4Hr1G015250.6	AT1G14440.1	16428600
AT1G75240.1	HORVU1Hr1G091470.1	AT1G75240.1	16428600
AT1G75240.1	HORVU6Hr1G069070.1	AT1G75240.1	16428600
AT1G75240.1	HORVU6Hr1G069090.1	AT1G75240.1	16428600
AT1G75240.1	HORVU1Hr1G091470.1	AT3G50890.1	16428600
AT1G75240.1	HORVU6Hr1G069070.1	AT3G50890.1	16428600
AT1G75240.1	HORVU6Hr1G069090.1	AT3G50890.1	16428600
AT1G75240.1	HORVU1Hr1G013140.1	AT5G15210.1	16428600
AT1G75240.1	HORVU5Hr1G065740.1	AT5G15210.1	16428600
AT1G75240.1	HORVU5Hr1G069730.1	AT5G65410.1	16428600
AT2G18350.1	HORVU4Hr1G015250.6	AT1G14440.1	16428600
AT2G18350.1	HORVU5Hr1G069730.1	AT5G65410.1	16428600
AT3G50890.1	HORVU4Hr1G015250.6	AT1G14440.1	16428600
AT3G50890.1	HORVU1Hr1G091470.1	AT1G75240.1	16428600
AT3G50890.1	HORVU6Hr1G069070.1	AT1G75240.1	16428600
AT3G50890.1	HORVU6Hr1G069090.1	AT1G75240.1	16428600
AT3G50890.1	HORVU1Hr1G013140.1	AT5G15210.1	16428600
AT3G50890.1	HORVU5Hr1G065740.1	AT5G15210.1	16428600
AT3G50890.1	HORVU5Hr1G069730.1	AT5G65410.1	16428600

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G273700.1	Wheat	nucleus	83.95	83.23
TraesCS6D01G253700.1	Wheat	nucleus	83.73	83.01
TraesCS6B01G301000.1	Wheat	nucleus	82.86	82.86
HORVU6Hr1G069070.1	Barley	plastid	39.48	64.77
HORVU1Hr1G091470.1	Barley	nucleus	21.69	42.55
GSMUA_Achr2P23010_001	Banana	nucleus	23.21	36.77
GSMUA_Achr10P...	Banana	nucleus	20.39	35.47
HORVU5Hr1G045580.1	Barley	cytosol	7.16	35.11
HORVU3Hr1G096990.1	Barley	cytosol	7.38	34.34
HORVU5Hr1G069730.1	Barley	nucleus	21.69	33.11
CDY37252	Canola	nucleus	17.79	31.42
VIT_18s0001g12580.t01	Wine grape	nucleus	21.48	31.33
CDY62531	Canola	nucleus	17.79	31.18
CDX77960	Canola	nucleus	14.75	31.05
Bra036852.1-P	Field mustard	nucleus	14.75	31.05
CDX73775	Canola	nucleus	14.32	30.7
PGSC0003DMT400009581	Potato	nucleus	18.87	30.63
CDY70550	Canola	nucleus	16.49	29.57
CDX90679	Canola	nucleus	15.4	29.22
Solyc04g080490.2.1	Tomato	nucleus	18.22	28.97
AT3G50890.1	Thale cress	nucleus	15.62	28.92
CDY45419	Canola	nucleus	18.0	28.82
CDY70108	Canola	nucleus	16.49	28.68
Bra037224.1-P	Field mustard	nucleus	16.49	28.68
AT2G18350.1	Thale cress	nucleus	16.05	28.24
Bra008185.1-P	Field mustard	nucleus	18.0	28.23
CDY28987	Canola	nucleus	14.97	28.16
KRH69909	Soybean	nucleus	20.39	28.14
CDY71124	Canola	nucleus	15.62	28.02
CDX73152	Canola	nucleus	18.0	27.76
KRH08258	Soybean	nucleus	19.74	27.66
Bra015857.1-P	Field mustard	nucleus	18.0	27.48
HORVU2Hr1G075950.1	Barley	nucleus	16.92	26.71
HORVU4Hr1G008360.1	Barley	cytosol, mitochondrion, nucleus	13.88	26.67
HORVU1Hr1G013140.1	Barley	cytosol	4.34	26.67
Solyc02g085160.1.1	Tomato	nucleus	16.92	26.62
CDX85886	Canola	nucleus	16.92	26.53
CDX68137	Canola	nucleus	16.92	26.26
Bra003759.1-P	Field mustard	nucleus	16.7	26.19
KRH76785	Soybean	nucleus	18.0	26.18
AT1G75240.1	Thale cress	nucleus	17.35	25.89
PGSC0003DMT400009033	Potato	nucleus	16.92	25.83
KRH28682	Soybean	nucleus	18.44	25.3
Bra012882.1-P	Field mustard	nucleus	13.45	23.4
HORVU4Hr1G015250.6	Barley	nucleus, plastid	20.82	22.86
HORVU5Hr1G065740.1	Barley	nucleus	18.0	21.5
VIT_04s0023g01880.t01	Wine grape	nucleus	17.79	18.94

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.13	UniProt:A0A287UJS9	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	EnsemblPlantsGene:HORVU6Hr1G069090	EnsemblPlants:HORVU6Hr1G069090.1	InterPro:Homeobox-like_sf	InterPro:Homeodomain_ZF_HD
InterPro:IPR006456	PFAM:PD125774	PFAM:PF04770	PFscan:PS51523	PANTHER:PTHR31948	PANTHER:PTHR31948:SF11
SUPFAM:SSF46689	TIGRFAMs:TIGR01565	TIGRFAMs:TIGR01566	UniParc:UPI000B4819BE	InterPro:ZF_HD_homeobox_Cys/His_dimer	SEG:seg

Description

No Description!

Coordinates

chrchr6H:+:478383683..478385547

Molecular Weight (calculated)

47446.4 Da

IEP (calculated)

6.925

GRAVY (calculated)

-0.977

Length

461 amino acids

Sequence
(BLAST)

001: MEYKRPSHVE EDEELDGEEE EEEEDDEEED EEEDEEQEEG VMREDRRHQH QHQHHHRHHY TTAPATAAPP QHLHMHGRAP QVLGSPAAAA SSPXXXXXXX
101: XXXXXXXXXX XXXXXXPPPP PQAPPGFLLP QHQHPNRRRM DSERERERTV EAAPGEAHRQ HHHQQQPQHQ RQRQHEPARN GVLGGGAMPP PPPTLAIVTG
201: SSTRAPGEHG GATGPEPLPW RYRECLRNHA ARMGAHVLDG CGEFMPSPGD GVAALACAAC GCXXXXXRRE PVLVVPSPSP SPASAVVSPS ATPAGANSRL
301: MPLLLAPPHM QQKRPAVPAS PMSAPAALAE SSSEELRAPP PPPPPPQAQA AVGSASAPPA PSKKRFRTKF TPEQKERMLE FAHRVGWRVQ KPDGGVVDAF
401: CAQVGVPRRV LKVWMHNNKH LAKTSQPLPP LHHDHPPPPP PHHQHHHPPP PHQQQQQQHG A

Best Arabidopsis Sequence Match ( AT1G14440.1 )
(BLAST)

001: MEIASQEDHD MPIPLNTTFG GGGSHGHMIH HHDHHAANSA PPTHNNNNTT QPPPMPLHGN GHGNNYDHHH HQDPHHVGYN AIIKKPMIKY KECLKNHAAA
101: MGGNATDGCG EFMPSGEDGS IEALTCSACN CHRNFHRKEV EGELAATAMS PYHQHPPHRK LMLNHQKIRS AMPHQMIMPI GVSNYRYMHN NSESEDFMEE
201: DGVTTASRSL PNLPYNQKKR FRTKFTPEQK EKMLSFAEKV GWKIQRQEDC VVQRFCEEIG VKRRVLKVWM HNNKIHFSKK NNINLEDNDN EKINNLNNVD
301: LSGNNDMTKI VP

Arabidopsis Description

ZHD4Zinc-finger homeodomain protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9M9S0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.