Factsheet for HORVU4Hr1G015250.6

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 3
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	nucleus, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
TargetP:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU1Hr1G013140.1
HORVU1Hr1G091470.1
HORVU4Hr1G015250.6
HORVU5Hr1G065740.1
HORVU5Hr1G069730.1
HORVU6Hr1G069070.1
HORVU6Hr1G069090.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G14440.1	HORVU4Hr1G015250.6	AT1G14440.1	16428600
AT1G14440.1	HORVU1Hr1G091470.1	AT1G75240.1	16428600
AT1G14440.1	HORVU6Hr1G069070.1	AT1G75240.1	16428600
AT1G14440.1	HORVU6Hr1G069090.1	AT1G75240.1	16428600
AT1G14440.1	HORVU1Hr1G091470.1	AT2G18350.1	16428600
AT1G14440.1	HORVU6Hr1G069070.1	AT2G18350.1	16428600
AT1G14440.1	HORVU6Hr1G069090.1	AT2G18350.1	16428600
AT1G14440.1	HORVU1Hr1G091470.1	AT3G50890.1	16428600
AT1G14440.1	HORVU6Hr1G069070.1	AT3G50890.1	16428600
AT1G14440.1	HORVU6Hr1G069090.1	AT3G50890.1	16428600
AT1G14440.1	HORVU1Hr1G013140.1	AT5G15210.1	16428600
AT1G14440.1	HORVU5Hr1G065740.1	AT5G15210.1	16428600
AT1G14440.1	HORVU5Hr1G069730.1	AT5G65410.1	16428600

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G086300.1	Wheat	nucleus	84.76	91.52
TraesCS4B01G089700.1	Wheat	nucleus	85.24	90.18
TraesCS4A01G226800.1	Wheat	nucleus	85.0	89.03
Os11t0243300-01	Rice	cytosol, mitochondrion, nucleus, plastid	62.62	63.07
GSMUA_Achr6P28870_001	Banana	nucleus	31.9	59.29
GSMUA_Achr1P13300_001	Banana	nucleus	31.9	59.29
KXG28111	Sorghum	nucleus	55.0	58.63
Zm00001d049000_P001	Maize	plastid	58.1	58.1
GSMUA_Achr10P...	Banana	nucleus	33.1	57.44
GSMUA_Achr9P08090_001	Banana	nucleus	32.86	57.26
GSMUA_Achr6P17420_001	Banana	nucleus	27.86	56.52
GSMUA_Achr3P16680_001	Banana	nucleus	30.48	54.94
KRG92484	Soybean	nucleus	23.57	52.11
PGSC0003DMT400053397	Potato	nucleus	27.86	40.77
Solyc01g102980.2.1	Tomato	nucleus	28.1	40.69
HORVU5Hr1G045580.1	Barley	cytosol	8.33	37.23
HORVU5Hr1G069730.1	Barley	nucleus	26.43	36.76
Bra026589.1-P	Field mustard	nucleus	26.19	36.67
CDY53549	Canola	nucleus	27.38	36.62
Bra026830.1-P	Field mustard	nucleus	27.38	36.62
CDY09363	Canola	nucleus	25.95	36.58
AT1G14440.1	Thale cress	nucleus	27.14	36.54
CDX81638	Canola	nucleus	27.38	36.51
VIT_07s0130g00240.t01	Wine grape	nucleus	17.14	36.36
CDY41692	Canola	nucleus	25.95	36.33
Bra026219.1-P	Field mustard	nucleus	26.43	35.81
CDY45257	Canola	nucleus	26.43	35.69
AT2G02540.2	Thale cress	nucleus	26.19	35.48
HORVU3Hr1G096990.1	Barley	cytosol	8.33	35.35
HORVU1Hr1G091470.1	Barley	nucleus	19.76	35.32
CDY39311	Canola	nucleus	25.24	34.64
HORVU4Hr1G008360.1	Barley	cytosol, mitochondrion, nucleus	18.33	32.08
HORVU1Hr1G013140.1	Barley	cytosol	5.71	32.0
HORVU2Hr1G075950.1	Barley	nucleus	21.43	30.82
HORVU5Hr1G065740.1	Barley	nucleus	20.71	22.54
HORVU6Hr1G069090.1	Barley	nucleus	22.86	20.82
HORVU6Hr1G069070.1	Barley	plastid	9.05	13.52

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.13	UniProt:A0A287NCC9	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	EnsemblPlantsGene:HORVU4Hr1G015250	EnsemblPlants:HORVU4Hr1G015250.6	InterPro:Homeobox-like_sf	InterPro:Homeobox_dom	InterPro:Homeodomain_ZF_HD
InterPro:IPR001356	InterPro:IPR006456	PFAM:PD125774	PFAM:PF04770	PFscan:PS51523	PANTHER:PTHR31948
PANTHER:PTHR31948:SF42	SUPFAM:SSF46689	TIGRFAMs:TIGR01565	TIGRFAMs:TIGR01566	UniParc:UPI000B46FE6A	InterPro:ZF_HD_homeobox_Cys/His_dimer
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chrchr4H:+:58178472..58180682

Molecular Weight (calculated)

44263.4 Da

IEP (calculated)

8.109

GRAVY (calculated)

-0.600

Length

420 amino acids

Sequence
(BLAST)

001: LTPRSIARSP ALPSQEQPHC SSSSIHPSSL RVQRRRTEAA AAEPPARSFL PDREEGERMD LSVPRGEFPI PMHAAAASPY GGGIGGGGVA VADHAMDLHH
101: DHANHNGQSQ PQAQDMASPP AAVSEDSSGK KRAAAIAGGG GGGPAVKYRE CLKNHAAAIG GNATDGCGEF MPSGEEGSLE ALKCSACGCH RNFHRKELDD
201: LDGDSCASHG YGYGHHAVRR LLGPAVSHSH HHKSSGGLLV TADHYGAYAA ARALPPPPPP LPGHHHQIIM PLNMIQTSES DEMDGIMGDG RGGLASGGGG
301: GSSSSKKRFR TKFTAEQKGR MLEFAEGVGW RLQKLDDAMV QHFCQEIGVK RRVLKVWMHN NKHNLASRPP PTSPPQPMPV AMSMPMPLGM SMPMQVPPPS
401: QPGPSGHRGP SSPHGELKLD

Best Arabidopsis Sequence Match ( AT1G14440.1 )
(BLAST)

001: MEIASQEDHD MPIPLNTTFG GGGSHGHMIH HHDHHAANSA PPTHNNNNTT QPPPMPLHGN GHGNNYDHHH HQDPHHVGYN AIIKKPMIKY KECLKNHAAA
101: MGGNATDGCG EFMPSGEDGS IEALTCSACN CHRNFHRKEV EGELAATAMS PYHQHPPHRK LMLNHQKIRS AMPHQMIMPI GVSNYRYMHN NSESEDFMEE
201: DGVTTASRSL PNLPYNQKKR FRTKFTPEQK EKMLSFAEKV GWKIQRQEDC VVQRFCEEIG VKRRVLKVWM HNNKIHFSKK NNINLEDNDN EKINNLNNVD
301: LSGNNDMTKI VP

Arabidopsis Description

ZHD4Zinc-finger homeodomain protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9M9S0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.