Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr6P28870_001 | Banana | nucleus | 75.62 | 80.97 |
| GSMUA_Achr1P13300_001 | Banana | nucleus | 74.38 | 79.65 |
| GSMUA_Achr9P08090_001 | Banana | nucleus | 78.51 | 78.84 |
| GSMUA_Achr6P17420_001 | Banana | nucleus | 62.4 | 72.95 |
| GSMUA_Achr3P16680_001 | Banana | nucleus | 68.59 | 71.24 |
| GSMUA_Achr7P19060_001 | Banana | nucleus | 43.39 | 50.97 |
| VIT_12s0035g01880.t01 | Wine grape | nucleus | 57.85 | 49.82 |
| KRH51275 | Soybean | nucleus | 57.44 | 49.12 |
| GSMUA_Achr3P20390_001 | Banana | nucleus | 40.91 | 47.83 |
| GSMUA_AchrUn_... | Banana | cytosol | 17.77 | 46.24 |
| KRH01880 | Soybean | nucleus | 54.55 | 46.15 |
| PGSC0003DMT400053397 | Potato | nucleus | 54.13 | 45.64 |
| Solyc01g102980.2.1 | Tomato | nucleus | 54.13 | 45.17 |
| GSMUA_Achr10P... | Banana | nucleus | 41.32 | 43.67 |
| GSMUA_Achr6P02170_001 | Banana | nucleus | 40.91 | 42.86 |
| GSMUA_Achr5P05500_001 | Banana | nucleus | 41.74 | 42.44 |
| GSMUA_Achr6P30650_001 | Banana | mitochondrion | 16.12 | 41.05 |
| Bra026589.1-P | Field mustard | nucleus | 48.35 | 39.0 |
| CDY09363 | Canola | nucleus | 47.52 | 38.59 |
| AT2G02540.2 | Thale cress | nucleus | 49.17 | 38.39 |
| Bra026219.1-P | Field mustard | nucleus | 49.17 | 38.39 |
| CDY41692 | Canola | nucleus | 47.52 | 38.33 |
| GSMUA_AchrUn_... | Banana | nucleus | 39.26 | 38.0 |
| AT1G14440.1 | Thale cress | nucleus | 48.76 | 37.82 |
| KXG23238 | Sorghum | nucleus | 51.24 | 37.8 |
| CDX81638 | Canola | nucleus | 49.17 | 37.78 |
| CDY53549 | Canola | nucleus | 48.76 | 37.58 |
| Bra026830.1-P | Field mustard | nucleus | 48.76 | 37.58 |
| CDY45257 | Canola | nucleus | 47.93 | 37.3 |
| CDY39311 | Canola | nucleus | 46.69 | 36.93 |
| KXG28111 | Sorghum | nucleus | 59.92 | 36.8 |
| TraesCS4D01G086300.1 | Wheat | nucleus | 58.68 | 36.5 |
| TraesCS4B01G089700.1 | Wheat | nucleus | 58.68 | 35.77 |
| TraesCS4A01G226800.1 | Wheat | nucleus | 58.26 | 35.16 |
| Zm00001d049000_P001 | Maize | plastid | 60.33 | 34.76 |
| Zm00001d041780_P001 | Maize | nucleus | 50.0 | 34.67 |
| Os11t0243300-01 | Rice | cytosol, mitochondrion, nucleus, plastid | 59.09 | 34.29 |
| HORVU4Hr1G015250.6 | Barley | nucleus, plastid | 57.44 | 33.1 |
| GSMUA_Achr3P31090_001 | Banana | nucleus | 38.43 | 32.86 |
| Os12t0208900-00 | Rice | nucleus | 29.34 | 31.98 |
| GSMUA_Achr6P02700_001 | Banana | nucleus | 31.41 | 31.93 |
| GSMUA_Achr4P07850_001 | Banana | nucleus | 42.98 | 31.42 |
| GSMUA_Achr2P23010_001 | Banana | nucleus | 37.6 | 31.27 |
| GSMUA_Achr10P... | Banana | nucleus | 33.88 | 30.94 |
| GSMUA_Achr7P25600_001 | Banana | nucleus | 42.56 | 29.68 |
| GSMUA_Achr8P27010_001 | Banana | nucleus | 38.84 | 29.28 |
| GSMUA_Achr4P14910_001 | Banana | nucleus | 38.84 | 28.48 |
| GSMUA_Achr10P... | Banana | nucleus | 29.75 | 27.59 |
| GSMUA_Achr6P27240_001 | Banana | plastid | 40.5 | 25.52 |
| GSMUA_Achr6P22120_001 | Banana | nucleus | 41.32 | 25.13 |
| GSMUA_Achr6P24230_001 | Banana | nucleus | 21.49 | 23.32 |
| GSMUA_Achr3P19060_001 | Banana | nucleus | 22.73 | 22.92 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr10P11020_001 | EnsemblPlants:GSMUA_Achr10T11020_001 | EnsemblPlantsGene:GSMUA_Achr10G11020_001 | Gene3D:1.10.10.60 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:Homeodomain_ZF_HD | InterPro:IPR006456 | InterPro:ZF_HD_homeobox_Cys/His_dimer |
| PANTHER:PTHR31948 | PFAM:PD125774 | PFAM:PF04770 | PFscan:PS51523 | SEG:seg | SUPFAM:SSF46689 |
| TIGRFAMs:TIGR01565 | TIGRFAMs:TIGR01566 | UniParc:UPI0002952AB9 | UniProt:M0RH78 | MapMan:15.5.3.13 | : |
Description
Putative ZF-HD protein dimerisation region containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr10G11020_001]
Coordinates
chr10:-:20650358..20651206
Molecular Weight (calculated)
26381.5 Da
IEP (calculated)
8.192
GRAVY (calculated)
-0.683
Length
242 amino acids
Sequence
(BLAST)
(BLAST)
001: MDLSGHDGDI PIPIPITSTY VVGHGPPHGH GMTHDTSPLH HRSSGSSPPP AAAAAAPPPP LSAATTEDHH HSTNPYSTKK GLVVKYRECL KNHAAAIGGN
101: ATDGCGEFMP SGEEGTLEAL KCSACNCHRN FHRKEVEGEP PPHMIMPLGA MQTSESDEME GAGGGMMARP PLVKKRFRTK FTAEQKEKML HFAEKAGWRL
201: QKQEESAVQQ FCQEIGVKRR VLKVWMHNNK HNLAKKTPLQ LE
101: ATDGCGEFMP SGEEGTLEAL KCSACNCHRN FHRKEVEGEP PPHMIMPLGA MQTSESDEME GAGGGMMARP PLVKKRFRTK FTAEQKEKML HFAEKAGWRL
201: QKQEESAVQQ FCQEIGVKRR VLKVWMHNNK HNLAKKTPLQ LE
001: MEIASQEDPI PINTSYGNSG GGHGNMNHHH HANSAPSSLN ITTSNPLLVS SNSNGLGKNH DHSHHHHVGY NIMVTNIKKE KPVVIKYKEC LKNHAATMGG
101: NAIDGCGEFM PSGEEGSIEA LTCSVCNCHR NFHRRETEGE EKTFFSPYLN HHQPPPQQRK LMFHHKMIKS PLPQQMIMPI GVTTAGSNSE SEDLMEEEGG
201: GSLTFRQPPP PPSPYSYGHN QKKRFRTKFT QEQKEKMISF AERVGWKIQR QEESVVQQLC QEIGIRRRVL KVWMHNNKQN LSKKSNNVSN NVDLSAGNND
301: ITENLASTNP
101: NAIDGCGEFM PSGEEGSIEA LTCSVCNCHR NFHRRETEGE EKTFFSPYLN HHQPPPQQRK LMFHHKMIKS PLPQQMIMPI GVTTAGSNSE SEDLMEEEGG
201: GSLTFRQPPP PPSPYSYGHN QKKRFRTKFT QEQKEKMISF AERVGWKIQR QEESVVQQLC QEIGIRRRVL KVWMHNNKQN LSKKSNNVSN NVDLSAGNND
301: ITENLASTNP
Arabidopsis Description
ZHD3Zinc-finger homeodomain protein 3 [Source:UniProtKB/Swiss-Prot;Acc:O64722]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.