Factsheet for GSMUA_Achr6P27240_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr1P13300_001
GSMUA_Achr2P23010_001
GSMUA_Achr3P16680_001
GSMUA_Achr3P19060_001
GSMUA_Achr3P20390_001
GSMUA_Achr3P31090_001
GSMUA_Achr4P07850_001
GSMUA_Achr4P14910_001
GSMUA_Achr5P05500_001
GSMUA_Achr6P02170_001
GSMUA_Achr6P02700_001
GSMUA_Achr6P17420_001
GSMUA_Achr6P22120_001
GSMUA_Achr6P24230_001
GSMUA_Achr6P27240_001
GSMUA_Achr6P28870_001
GSMUA_Achr7P19060_001
GSMUA_Achr7P25600_001
GSMUA_Achr8P27010_001
GSMUA_Achr9P08090_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G75240.1	GSMUA_Achr10P...	AT1G14440.1	16428600
AT1G75240.1	GSMUA_Achr1P13300_001	AT1G14440.1	16428600
AT1G75240.1	GSMUA_Achr3P16680_001	AT1G14440.1	16428600
AT1G75240.1	GSMUA_Achr6P17420_001	AT1G14440.1	16428600
AT1G75240.1	GSMUA_Achr6P28870_001	AT1G14440.1	16428600
AT1G75240.1	GSMUA_Achr9P08090_001	AT1G14440.1	16428600
AT1G75240.1	GSMUA_Achr10P...	AT1G75240.1	16428600
AT1G75240.1	GSMUA_Achr2P23010_001	AT1G75240.1	16428600
AT1G75240.1	GSMUA_Achr3P19060_001	AT1G75240.1	16428600
AT1G75240.1	GSMUA_Achr3P31090_001	AT1G75240.1	16428600
AT1G75240.1	GSMUA_Achr4P07850_001	AT1G75240.1	16428600
AT1G75240.1	GSMUA_Achr4P14910_001	AT1G75240.1	16428600
AT1G75240.1	GSMUA_Achr6P22120_001	AT1G75240.1	16428600
AT1G75240.1	GSMUA_Achr6P24230_001	AT1G75240.1	16428600
AT1G75240.1	GSMUA_Achr6P27240_001	AT1G75240.1	16428600
AT1G75240.1	GSMUA_Achr7P25600_001	AT1G75240.1	16428600
AT1G75240.1	GSMUA_Achr8P27010_001	AT1G75240.1	16428600
AT1G75240.1	GSMUA_Achr10P...	AT3G50890.1	16428600
AT1G75240.1	GSMUA_Achr2P23010_001	AT3G50890.1	16428600
AT1G75240.1	GSMUA_Achr3P19060_001	AT3G50890.1	16428600
AT1G75240.1	GSMUA_Achr3P31090_001	AT3G50890.1	16428600
AT1G75240.1	GSMUA_Achr4P07850_001	AT3G50890.1	16428600
AT1G75240.1	GSMUA_Achr4P14910_001	AT3G50890.1	16428600
AT1G75240.1	GSMUA_Achr6P22120_001	AT3G50890.1	16428600
AT1G75240.1	GSMUA_Achr6P24230_001	AT3G50890.1	16428600
AT1G75240.1	GSMUA_Achr6P27240_001	AT3G50890.1	16428600
AT1G75240.1	GSMUA_Achr7P25600_001	AT3G50890.1	16428600
AT1G75240.1	GSMUA_Achr8P27010_001	AT3G50890.1	16428600
AT1G75240.1	GSMUA_Achr10P...	AT5G15210.1	16428600
AT1G75240.1	GSMUA_Achr6P02700_001	AT5G15210.1	16428600
AT1G75240.1	GSMUA_Achr10P...	AT5G65410.1	16428600
AT1G75240.1	GSMUA_Achr3P20390_001	AT5G65410.1	16428600
AT1G75240.1	GSMUA_Achr5P05500_001	AT5G65410.1	16428600
AT1G75240.1	GSMUA_Achr6P02170_001	AT5G65410.1	16428600
AT1G75240.1	GSMUA_Achr7P19060_001	AT5G65410.1	16428600
AT1G75240.1	GSMUA_AchrUn_...	AT5G65410.1	16428600
AT2G18350.1	GSMUA_Achr10P...	AT1G14440.1	16428600
AT2G18350.1	GSMUA_Achr1P13300_001	AT1G14440.1	16428600
AT2G18350.1	GSMUA_Achr3P16680_001	AT1G14440.1	16428600
AT2G18350.1	GSMUA_Achr6P17420_001	AT1G14440.1	16428600
AT2G18350.1	GSMUA_Achr6P28870_001	AT1G14440.1	16428600
AT2G18350.1	GSMUA_Achr9P08090_001	AT1G14440.1	16428600
AT2G18350.1	GSMUA_Achr10P...	AT5G65410.1	16428600
AT2G18350.1	GSMUA_Achr3P20390_001	AT5G65410.1	16428600
AT2G18350.1	GSMUA_Achr5P05500_001	AT5G65410.1	16428600
AT2G18350.1	GSMUA_Achr6P02170_001	AT5G65410.1	16428600
AT2G18350.1	GSMUA_Achr7P19060_001	AT5G65410.1	16428600
AT2G18350.1	GSMUA_AchrUn_...	AT5G65410.1	16428600
AT3G50890.1	GSMUA_Achr10P...	AT1G14440.1	16428600
AT3G50890.1	GSMUA_Achr1P13300_001	AT1G14440.1	16428600
AT3G50890.1	GSMUA_Achr3P16680_001	AT1G14440.1	16428600
AT3G50890.1	GSMUA_Achr6P17420_001	AT1G14440.1	16428600
AT3G50890.1	GSMUA_Achr6P28870_001	AT1G14440.1	16428600
AT3G50890.1	GSMUA_Achr9P08090_001	AT1G14440.1	16428600
AT3G50890.1	GSMUA_Achr10P...	AT1G75240.1	16428600
AT3G50890.1	GSMUA_Achr2P23010_001	AT1G75240.1	16428600
AT3G50890.1	GSMUA_Achr3P19060_001	AT1G75240.1	16428600
AT3G50890.1	GSMUA_Achr3P31090_001	AT1G75240.1	16428600
AT3G50890.1	GSMUA_Achr4P07850_001	AT1G75240.1	16428600
AT3G50890.1	GSMUA_Achr4P14910_001	AT1G75240.1	16428600
AT3G50890.1	GSMUA_Achr6P22120_001	AT1G75240.1	16428600
AT3G50890.1	GSMUA_Achr6P24230_001	AT1G75240.1	16428600
AT3G50890.1	GSMUA_Achr6P27240_001	AT1G75240.1	16428600
AT3G50890.1	GSMUA_Achr7P25600_001	AT1G75240.1	16428600
AT3G50890.1	GSMUA_Achr8P27010_001	AT1G75240.1	16428600
AT3G50890.1	GSMUA_Achr10P...	AT5G15210.1	16428600
AT3G50890.1	GSMUA_Achr6P02700_001	AT5G15210.1	16428600
AT3G50890.1	GSMUA_Achr10P...	AT5G65410.1	16428600
AT3G50890.1	GSMUA_Achr3P20390_001	AT5G65410.1	16428600
AT3G50890.1	GSMUA_Achr5P05500_001	AT5G65410.1	16428600
AT3G50890.1	GSMUA_Achr6P02170_001	AT5G65410.1	16428600
AT3G50890.1	GSMUA_Achr7P19060_001	AT5G65410.1	16428600
AT3G50890.1	GSMUA_AchrUn_...	AT5G65410.1	16428600

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P27010_001	Banana	nucleus	51.04	61.06
GSMUA_Achr3P31090_001	Banana	nucleus	38.54	52.3
GSMUA_Achr6P22120_001	Banana	nucleus	50.52	48.74
GSMUA_Achr7P25600_001	Banana	nucleus	41.67	46.11
GSMUA_Achr4P07850_001	Banana	nucleus	39.32	45.62
GSMUA_Achr6P28870_001	Banana	nucleus	26.3	44.69
GSMUA_Achr7P19060_001	Banana	nucleus	23.96	44.66
GSMUA_Achr6P17420_001	Banana	nucleus	23.7	43.96
GSMUA_Achr1P13300_001	Banana	nucleus	25.78	43.81
GSMUA_Achr4P14910_001	Banana	nucleus	36.72	42.73
GSMUA_Achr10P...	Banana	nucleus	29.43	42.64
GSMUA_Achr3P16680_001	Banana	nucleus	25.52	42.06
GSMUA_Achr3P20390_001	Banana	nucleus	22.4	41.55
GSMUA_Achr9P08090_001	Banana	nucleus	26.04	41.49
GSMUA_Achr10P...	Banana	nucleus	24.22	40.61
GSMUA_Achr10P...	Banana	nucleus	25.52	40.5
GSMUA_Achr2P23010_001	Banana	nucleus	29.95	39.52
GSMUA_Achr6P02170_001	Banana	nucleus	23.7	39.39
GSMUA_Achr5P05500_001	Banana	nucleus	24.22	39.08
GSMUA_Achr6P30650_001	Banana	mitochondrion	9.11	36.84
GSMUA_AchrUn_...	Banana	nucleus	23.18	35.6
CDX73775	Canola	nucleus	19.79	35.35
CDX77960	Canola	nucleus	20.05	35.16
Bra036852.1-P	Field mustard	nucleus	20.05	35.16
GSMUA_AchrUn_...	Banana	cytosol	8.33	34.41
GSMUA_Achr6P02700_001	Banana	nucleus	21.09	34.03
CDX90679	Canola	nucleus	21.09	33.33
AT3G50890.1	Thale cress	nucleus	21.35	32.93
CDY28987	Canola	nucleus	20.57	32.24
CDY37252	Canola	nucleus	21.88	32.18
CDY62531	Canola	nucleus	21.88	31.94
PGSC0003DMT400009581	Potato	nucleus	23.18	31.34
Solyc04g080490.2.1	Tomato	nucleus	23.18	30.69
AT2G18350.1	Thale cress	nucleus	20.57	30.15
CDY70550	Canola	nucleus	20.05	29.96
VIT_18s0001g12580.t01	Wine grape	nucleus	24.48	29.75
CDY71124	Canola	nucleus	19.79	29.57
CDY70108	Canola	nucleus	20.31	29.43
Solyc02g085160.1.1	Tomato	nucleus	22.4	29.35
CDX85886	Canola	nucleus	22.4	29.25
GSMUA_Achr10P...	Banana	nucleus	19.79	29.12
Bra037224.1-P	Field mustard	nucleus	20.05	29.06
CDX68137	Canola	nucleus	22.4	28.96
Bra003759.1-P	Field mustard	nucleus	22.14	28.91
CDY45419	Canola	nucleus	21.61	28.82
Bra008185.1-P	Field mustard	nucleus	21.88	28.57
PGSC0003DMT400009033	Potato	nucleus	22.4	28.48
KRH76785	Soybean	nucleus	23.18	28.08
KRH08258	Soybean	nucleus	23.96	27.96
KRH69909	Soybean	nucleus	24.22	27.84
Bra015857.1-P	Field mustard	nucleus	21.88	27.81
CDX73152	Canola	nucleus	21.61	27.76
AT1G75240.1	Thale cress	nucleus	22.14	27.51
Bra012882.1-P	Field mustard	nucleus	18.75	27.17
KRH28682	Soybean	nucleus	22.92	26.19
GSMUA_Achr6P24230_001	Banana	nucleus	14.84	25.56
GSMUA_Achr3P19060_001	Banana	nucleus	14.32	22.92
VIT_04s0023g01880.t01	Wine grape	nucleus	24.74	21.94

Protein Annotations

EnsemblPlants:GSMUA_Achr6P27240_001	EnsemblPlants:GSMUA_Achr6T27240_001	EnsemblPlantsGene:GSMUA_Achr6G27240_001	Gene3D:1.10.10.60	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:Homeodomain_ZF_HD	InterPro:IPR006456	InterPro:ZF_HD_homeobox_Cys/His_dimer
PANTHER:PTHR31948	PFAM:PD125774	PFAM:PF04770	PFscan:PS51523	SEG:seg	SUPFAM:SSF46689
TIGRFAMs:TIGR01565	TIGRFAMs:TIGR01566	UniParc:UPI00029661AA	UniProt:M0TAL9	MapMan:15.5.3.13	:

Description

ZF-HD homeobox protein At4g24660 [Source:GMGC_GENE;Acc:GSMUA_Achr6G27240_001]

Coordinates

chr6:-:27807226..27811841

Molecular Weight (calculated)

40890.7 Da

IEP (calculated)

8.155

GRAVY (calculated)

-0.238

Length

384 amino acids

Sequence
(BLAST)

001: MRSSTALSFN ARPPIRGSAF SKPVLSPSSS LISLRGGGGN GSGTSTAENV SLFGSTTPSS TAAAVDVLYQ SAARNTDPAP VSGATAPSNT KAAASASIRY
101: RECLRNHAAS IGGHVLDGCG EFMPEGDPSS PEALKCAACG CHRSFHRKEA EGDAAAADSY YRGAARQFQF GTTESSSEER MTAGAPTPAT TPRKRFRTKF
201: TMEQKEKMLA FAERMGWRIQ KQDEGLVEQF CAETGVRRQV LKVWMHNNKH LIRKPQQPPG QDEVLGVPKK QPPLLLVAGA VAAPVIGGRV TVEWLLGGVD
301: ELDVLEEVLV VALHFFDGLV ADGPGDVHPA IRGVEVEVGE RHLEALVLLL GPRVLELARA ALGAGRHLGY IWNEMEGSLI GSRR

Best Arabidopsis Sequence Match ( AT1G14440.1 )
(BLAST)

001: MEIASQEDHD MPIPLNTTFG GGGSHGHMIH HHDHHAANSA PPTHNNNNTT QPPPMPLHGN GHGNNYDHHH HQDPHHVGYN AIIKKPMIKY KECLKNHAAA
101: MGGNATDGCG EFMPSGEDGS IEALTCSACN CHRNFHRKEV EGELAATAMS PYHQHPPHRK LMLNHQKIRS AMPHQMIMPI GVSNYRYMHN NSESEDFMEE
201: DGVTTASRSL PNLPYNQKKR FRTKFTPEQK EKMLSFAEKV GWKIQRQEDC VVQRFCEEIG VKRRVLKVWM HNNKIHFSKK NNINLEDNDN EKINNLNNVD
301: LSGNNDMTKI VP

Arabidopsis Description

ZHD4Zinc-finger homeodomain protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9M9S0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.