Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr7P19060_001 | Banana | nucleus | 54.98 | 61.65 |
| GSMUA_Achr3P20390_001 | Banana | nucleus | 54.55 | 60.87 |
| Solyc04g074990.2.1 | Tomato | nucleus | 36.36 | 58.74 |
| VIT_18s0001g07140.t01 | Wine grape | nucleus | 58.44 | 58.7 |
| GSMUA_Achr10P... | Banana | nucleus | 58.01 | 58.52 |
| GSMUA_Achr5P05500_001 | Banana | nucleus | 58.01 | 56.3 |
| GSMUA_AchrUn_... | Banana | nucleus | 60.61 | 56.0 |
| Solyc05g051420.1.1 | Tomato | nucleus | 38.96 | 53.89 |
| PGSC0003DMT400084919 | Potato | nucleus | 40.69 | 53.71 |
| VIT_00s0199g00250.t01 | Wine grape | nucleus | 54.98 | 52.05 |
| Os08t0479400-01 | Rice | nucleus | 63.64 | 50.69 |
| PGSC0003DMT400096005 | Potato | cytosol, mitochondrion, nucleus | 32.03 | 50.34 |
| KRH45571 | Soybean | cytosol, nucleus | 41.99 | 49.74 |
| KRH45573 | Soybean | nucleus | 41.99 | 48.99 |
| KRH45572 | Soybean | nucleus | 41.99 | 48.99 |
| PGSC0003DMT400033624 | Potato | nucleus | 50.65 | 48.75 |
| KRH74513 | Soybean | nucleus | 52.38 | 47.64 |
| KRG99446 | Soybean | nucleus | 51.52 | 47.6 |
| Zm00001d031840_P001 | Maize | nucleus | 63.2 | 47.4 |
| GSMUA_AchrUn_... | Banana | cytosol | 19.05 | 47.31 |
| EES15144 | Sorghum | nucleus | 63.64 | 47.27 |
| KRG90215 | Soybean | cytosol | 41.56 | 45.28 |
| PGSC0003DMT400060623 | Potato | nucleus | 46.32 | 44.03 |
| GSMUA_Achr6P17420_001 | Banana | nucleus | 39.39 | 43.96 |
| GSMUA_Achr1P13300_001 | Banana | nucleus | 42.42 | 43.36 |
| Solyc04g014260.1.1 | Tomato | nucleus | 45.89 | 42.91 |
| KRG90132 | Soybean | cytosol | 37.66 | 42.44 |
| GSMUA_Achr6P30650_001 | Banana | mitochondrion | 17.32 | 42.11 |
| CDY54719 | Canola | nucleus | 43.72 | 41.91 |
| GSMUA_Achr6P28870_001 | Banana | nucleus | 40.69 | 41.59 |
| KRH69650 | Soybean | nucleus | 52.81 | 41.36 |
| Bra037816.1-P | Field mustard | nucleus | 43.29 | 41.32 |
| GSMUA_Achr3P16680_001 | Banana | nucleus | 41.56 | 41.2 |
| GSMUA_Achr10P... | Banana | nucleus | 42.86 | 40.91 |
| CDY33960 | Canola | nucleus | 47.62 | 40.89 |
| CDX81284 | Canola | nucleus | 45.02 | 40.78 |
| AT5G65410.1 | Thale cress | nucleus | 48.48 | 40.14 |
| Bra031859.1-P | Field mustard | nucleus | 47.19 | 40.07 |
| CDY37827 | Canola | nucleus | 47.19 | 40.07 |
| KRH45574 | Soybean | cytosol | 45.02 | 39.85 |
| CDY14559 | Canola | nucleus | 48.92 | 38.57 |
| KRG90210 | Soybean | nucleus | 42.42 | 38.28 |
| KRH71953 | Soybean | nucleus | 42.42 | 38.28 |
| Bra024382.1-P | Field mustard | nucleus | 48.48 | 38.23 |
| GSMUA_Achr9P08090_001 | Banana | nucleus | 39.83 | 38.17 |
| KRH71954 | Soybean | nucleus | 39.83 | 37.25 |
| KRG90211 | Soybean | cytosol | 41.13 | 36.97 |
| KRG90213 | Soybean | nucleus | 40.69 | 36.86 |
| GSMUA_Achr3P31090_001 | Banana | nucleus | 39.83 | 32.51 |
| GSMUA_Achr6P02700_001 | Banana | nucleus | 32.47 | 31.51 |
| GSMUA_Achr10P... | Banana | nucleus | 35.5 | 30.94 |
| GSMUA_Achr8P27010_001 | Banana | nucleus | 40.26 | 28.97 |
| GSMUA_Achr2P23010_001 | Banana | nucleus | 35.5 | 28.18 |
| GSMUA_Achr4P07850_001 | Banana | nucleus | 39.83 | 27.79 |
| GSMUA_Achr10P... | Banana | nucleus | 30.3 | 26.82 |
| GSMUA_Achr7P25600_001 | Banana | nucleus | 40.26 | 26.8 |
| GSMUA_Achr4P14910_001 | Banana | nucleus | 37.23 | 26.06 |
| GSMUA_Achr6P24230_001 | Banana | nucleus | 23.81 | 24.66 |
| GSMUA_Achr3P19060_001 | Banana | nucleus | 25.11 | 24.17 |
| GSMUA_Achr6P27240_001 | Banana | plastid | 39.39 | 23.7 |
| GSMUA_Achr6P22120_001 | Banana | nucleus | 40.26 | 23.37 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.13 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| EnsemblPlantsGene:GSMUA_Achr6G02170_001 | EnsemblPlants:GSMUA_Achr6P02170_001 | EnsemblPlants:GSMUA_Achr6T02170_001 | InterPro:Homeobox-like_sf | InterPro:Homeodomain_ZF_HD | InterPro:IPR006456 |
| UniProt:M0T3G5 | PFAM:PD125774 | PFAM:PF04770 | PFscan:PS51523 | PANTHER:PTHR31948 | PANTHER:PTHR31948:SF5 |
| SUPFAM:SSF46689 | TIGRFAMs:TIGR01565 | TIGRFAMs:TIGR01566 | UniParc:UPI00029492B0 | InterPro:ZF_HD_homeobox_Cys/His_dimer | SEG:seg |
Description
ZF-HD protein dimerisation region containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr6G02170_001]
Coordinates
chr6:+:1410325..1411149
Molecular Weight (calculated)
25227.8 Da
IEP (calculated)
8.503
GRAVY (calculated)
-0.728
Length
231 amino acids
Sequence
(BLAST)
(BLAST)
001: MDFDEHDEGI EEMALPVGSR GESASATAGM AMRGSGHRKT YGGRGGRGKY RECLKNHAVG IGGHAVDGCG EFMTAGEEGT LDALRCAACG CHRNFHRREE
101: EGGGAGGGAT EVIGYHPQFS PYNRAPGGYF HPHHSTAAAL ARDEQEETPI PMVGVGGGVG RRGGVVARKR FRTKFTQEQK EKMLAFAEWL GWRIQRHDEA
201: AVQKFCEETC VKRHALKVWM HNNKHTLGKK H
101: EGGGAGGGAT EVIGYHPQFS PYNRAPGGYF HPHHSTAAAL ARDEQEETPI PMVGVGGGVG RRGGVVARKR FRTKFTQEQK EKMLAFAEWL GWRIQRHDEA
201: AVQKFCEETC VKRHALKVWM HNNKHTLGKK H
001: MNFEDQEEDM EMSGVNPPCG YDSLSGEGAT SSGGGGVGRS KGVGAKIRYR ECLKNHAVNI GGHAVDGCCE FMPSGEDGTL DALKCAACGC HRNFHRKETE
101: SIGGRAHRVP TYYNRPPQPH QPPGYLHLTS PAAPYRPPAA SGDEEDTSNP SSSGGTTKRF RTKFTAEQKE KMLAFAERLG WRIQKHDDVA VEQFCAETGV
201: RRQVLKIWMH NNKNSLDGYQ VFKRYEATSA H
101: SIGGRAHRVP TYYNRPPQPH QPPGYLHLTS PAAPYRPPAA SGDEEDTSNP SSSGGTTKRF RTKFTAEQKE KMLAFAERLG WRIQKHDDVA VEQFCAETGV
201: RRQVLKIWMH NNKNSLDGYQ VFKRYEATSA H
Arabidopsis Description
ATHB22homeobox protein 22 [Source:TAIR;Acc:AT4G24660]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.