Factsheet for VIT_18s0001g07140.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s0199g00250.t01	Wine grape	nucleus	73.48	69.26
GSMUA_Achr7P19060_001	Banana	nucleus	58.26	65.05
GSMUA_Achr5P05500_001	Banana	nucleus	66.52	64.29
GSMUA_Achr10P...	Banana	nucleus	60.87	61.14
GSMUA_Achr3P20390_001	Banana	nucleus	53.48	59.42
VIT_17s0000g06200.t01	Wine grape	cytosol	12.61	59.18
GSMUA_Achr6P02170_001	Banana	nucleus	58.7	58.44
Zm00001d020774_P001	Maize	nucleus	68.26	57.51
Os09t0466400-01	Rice	nucleus	69.13	56.99
GSMUA_AchrUn_...	Banana	nucleus	60.87	56.0
EER96888	Sorghum	nucleus	70.43	53.64
TraesCS5D01G253100.1	Wheat	nucleus	68.26	53.04
Zm00001d005931_P001	Maize	nucleus	65.65	52.8
TraesCS5B01G243800.1	Wheat	nucleus	67.83	52.53
Os08t0479400-01	Rice	nucleus	66.09	52.41
Zm00001d031840_P001	Maize	nucleus	69.13	51.62
TraesCS5A01G246500.1	Wheat	nucleus	66.52	51.52
HORVU5Hr1G069730.1	Barley	nucleus	67.39	51.32
EES15144	Sorghum	nucleus	69.13	51.13
VIT_14s0108g00760.t01	Wine grape	mitochondrion	19.57	47.37
VIT_17s0000g00810.t01	Wine grape	nucleus	27.83	41.29
VIT_01s0026g02450.t01	Wine grape	cytosol	15.22	41.18
VIT_12s0035g01880.t01	Wine grape	nucleus	49.57	40.57
VIT_07s0130g00240.t01	Wine grape	nucleus	32.17	37.37
VIT_18s0001g12580.t01	Wine grape	nucleus	46.52	33.86
VIT_18s0117g00270.t01	Wine grape	nucleus	39.57	33.46
VIT_14s0108g00810.t01	Wine grape	cytosol	18.26	32.56
VIT_08s0056g01130.t01	Wine grape	nucleus	17.83	30.37
VIT_01s0026g02460.t01	Wine grape	nucleus	29.57	29.57
VIT_10s0042g00210.t01	Wine grape	nucleus	23.91	27.36
VIT_14s0108g00750.t01	Wine grape	nucleus	39.57	25.63
VIT_04s0023g01880.t01	Wine grape	nucleus	43.48	23.09

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100248818	wikigene:100248818	MapMan:15.5.3.13	EMBL:AM476712	ProteinID:CAN75153
ProteinID:CAN75153.1	ProteinID:CCB45628	ProteinID:CCB45628.1	UniProt:F6H106	EMBL:FN595227	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:Homeodomain_ZF_HD	InterPro:IPR006456
EntrezGene:LOC100248818	wikigene:LOC100248818	PFAM:PD125774	PFAM:PF04770	PFscan:PS51523	PANTHER:PTHR31948
PANTHER:PTHR31948:SF5	SUPFAM:SSF46689	TIGRFAMs:TIGR01565	TIGRFAMs:TIGR01566	UniParc:UPI00015C7BAA	ArrayExpress:VIT_18s0001g07140
EnsemblPlantsGene:VIT_18s0001g07140	EnsemblPlants:VIT_18s0001g07140.t01	RefSeq:XP_002285709	RefSeq:XP_002285709.1	InterPro:ZF_HD_homeobox_Cys/His_dimer	SEG:seg

Description

No Description!

Coordinates

chr18:+:5343590..5344691

Molecular Weight (calculated)

25179.3 Da

IEP (calculated)

7.596

GRAVY (calculated)

-0.879

Length

230 amino acids

Sequence
(BLAST)

001: MEFEEHEEQE EDMGMAVQAS YESVGNTGRP KMGSGGGEGA STVRKVGNSR YRECLKNHAV GIGGHAVDGC GEFMPAGDEG TLDGLRCAAC NCHRNFHRKE
101: SEGDTLYHQF SPYYRTPAGY LHVAPSQYRP LALPSTSGGG GHSREDQEDV SNPSSSGGGG GGSGSLKKRF RTKFTQEQKD KMLAFAETLG WRIQKHDEAA
201: VQQFCQETCV KRHVLKVWMH NNKHTLGKKP

Best Arabidopsis Sequence Match ( AT4G24660.1 )
(BLAST)

001: MNFEDQEEDM EMSGVNPPCG YDSLSGEGAT SSGGGGVGRS KGVGAKIRYR ECLKNHAVNI GGHAVDGCCE FMPSGEDGTL DALKCAACGC HRNFHRKETE
101: SIGGRAHRVP TYYNRPPQPH QPPGYLHLTS PAAPYRPPAA SGDEEDTSNP SSSGGTTKRF RTKFTAEQKE KMLAFAERLG WRIQKHDDVA VEQFCAETGV
201: RRQVLKIWMH NNKNSLGKKP

Arabidopsis Description

ATHB22homeobox protein 22 [Source:TAIR;Acc:AT4G24660]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.