CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
EER93559
EER95850
EER96888
EES15050
EES15144
KXG23238
KXG28111
KXG30914
KXG35632
OQU78488
OQU86730
OQU90902

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G65410.1	KXG23238	AT1G14440.1	16428600
AT5G65410.1	KXG28111	AT1G14440.1	16428600
AT5G65410.1	KXG30914	AT1G75240.1	16428600
AT5G65410.1	OQU78488	AT1G75240.1	16428600
AT5G65410.1	KXG30914	AT2G18350.1	16428600
AT5G65410.1	OQU78488	AT2G18350.1	16428600
AT5G65410.1	KXG30914	AT3G50890.1	16428600
AT5G65410.1	OQU78488	AT3G50890.1	16428600
AT5G65410.1	EES15050	AT5G15210.1	16428600
AT5G65410.1	KXG35632	AT5G15210.1	16428600
AT5G65410.1	OQU86730	AT5G15210.1	16428600
AT5G65410.1	EER93559	AT5G42780.1	16428600
AT5G65410.1	EER95850	AT5G42950.1	16120600
AT5G65410.1	OQU90902	AT5G42950.1	16120600
AT5G65410.1	EER96888	AT5G65410.1	16428600
AT5G65410.1	EES15144	AT5G65410.1	16428600

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d020774_P001	Maize	nucleus	76.49	84.62
Os09t0466400-01	Rice	nucleus	75.5	81.72
TraesCS5D01G253100.1	Wheat	nucleus	75.17	76.69
Zm00001d005931_P001	Maize	nucleus	72.52	76.57
TraesCS5B01G243800.1	Wheat	nucleus	74.83	76.09
TraesCS5A01G246500.1	Wheat	nucleus	73.84	75.08
HORVU5Hr1G069730.1	Barley	nucleus	73.51	73.51
VIT_18s0001g07140.t01	Wine grape	nucleus	53.64	70.43
EES15144	Sorghum	nucleus	69.87	67.85
GSMUA_Achr5P05500_001	Banana	nucleus	51.32	65.13
Solyc04g074990.2.1	Tomato	nucleus	30.13	63.64
Solyc05g051420.1.1	Tomato	nucleus	34.11	61.68
PGSC0003DMT400084919	Potato	nucleus	35.43	61.14
VIT_00s0199g00250.t01	Wine grape	nucleus	48.68	60.25
GSMUA_AchrUn_...	Banana	nucleus	48.68	58.8
KRG99446	Soybean	nucleus	48.01	58.0
KRH45571	Soybean	cytosol, nucleus	37.42	57.95
KRH74513	Soybean	nucleus	48.68	57.87
PGSC0003DMT400096005	Potato	cytosol, mitochondrion, nucleus	27.81	57.14
KRH45572	Soybean	nucleus	37.09	56.57
KRH45573	Soybean	nucleus	37.09	56.57
PGSC0003DMT400033624	Potato	nucleus	44.37	55.83
PGSC0003DMT400060623	Potato	nucleus	41.06	51.03
Solyc04g014260.1.1	Tomato	nucleus	41.72	51.01
KRG90132	Soybean	cytosol	33.77	49.76
KRG90215	Soybean	cytosol	34.11	48.58
KRH69650	Soybean	nucleus	47.35	48.47
KRH45574	Soybean	cytosol	41.72	48.28
KRH71953	Soybean	nucleus	37.42	44.14
KRG90210	Soybean	nucleus	37.42	44.14
CDY54719	Canola	nucleus	34.77	43.57
EES16563	Sorghum	cytosol	13.24	43.48
Bra037816.1-P	Field mustard	nucleus	34.44	42.98
KRG90213	Soybean	nucleus	36.09	42.75
KRH71954	Soybean	nucleus	34.77	42.51
KRG90211	Soybean	cytosol	35.76	42.02
CDX81284	Canola	nucleus	35.43	41.96
CDY33960	Canola	nucleus	36.76	41.26
Bra031859.1-P	Field mustard	nucleus	37.09	41.18
CDY37827	Canola	nucleus	37.09	41.18
AT5G65410.1	Thale cress	nucleus	37.42	40.5
Bra024382.1-P	Field mustard	nucleus	38.08	39.25
CDY14559	Canola	nucleus	38.08	39.25
EES07913	Sorghum	cytosol	12.58	38.78
KXG23238	Sorghum	nucleus	39.07	35.98
KXG25227	Sorghum	mitochondrion	14.24	33.86
KXG35630	Sorghum	nucleus	11.26	30.91
KXG28111	Sorghum	nucleus	39.07	29.95
EER93559	Sorghum	cytosol, mitochondrion, nucleus	22.85	29.49
OQU86730	Sorghum	nucleus	24.17	27.55
OQU78488	Sorghum	plastid	30.13	24.4
KXG35632	Sorghum	nucleus	29.47	23.36
KXG30914	Sorghum	nucleus	31.13	23.15
EES15050	Sorghum	cytosol	29.14	22.56

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.13	EntrezGene:8083250	UniProt:C5X2Z8	EnsemblPlants:EER96888	ProteinID:EER96888
ProteinID:EER96888.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	InterPro:Homeobox-like_sf
InterPro:Homeodomain_ZF_HD	InterPro:IPR006456	PFAM:PD125774	PFAM:PF04770	PFscan:PS51523	PANTHER:PTHR31948
PANTHER:PTHR31948:SF25	EnsemblPlantsGene:SORBI_3002G231100	SUPFAM:SSF46689	TIGRFAMs:TIGR01565	TIGRFAMs:TIGR01566	UniParc:UPI0001A83692
RefSeq:XP_002460367.1	InterPro:ZF_HD_homeobox_Cys/His_dimer	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr2:+:62260977..62263538

Molecular Weight (calculated)

31469.0 Da

IEP (calculated)

7.784

GRAVY (calculated)

-0.579

Length

302 amino acids

Sequence
(BLAST)

001: MDFDDHDDGD EEMAPMPVSS SYEAPPLAVA AGGFAGGVAA APKPPVGEPG GGRASKAPSG LGLGGLHGAG GGRYRECLKN HAVGIGGHAV DGCGEFMPAG
101: EEGTLDALRC AACNCHRNFH RKESPAAAEG SPISSAALVA YGGTPHQHHH FSPYYRTPAG AGYFHHHHHQ QPPPLHHMAH TPRPLALPST SPHSGRDDGD
201: DLSGMPMSAM GPLTLSGMSL GGSGGAGPSG GSGGSGSGKK RFRTKFTQEQ KDKMLAFAER VGWRIQKHDE AAVQQFCDEV GVKRHVLKVW MHNNKHTLGK
301: KP

Best Arabidopsis Sequence Match ( AT5G65410.1 )
(BLAST)

001: MEFEDNNNNN DEEQEEDMNL HEEEEDDDAV YDSPPLSRVL PKASTESHET TGTTSTGGGG GFMVVHGGGG SRFRFRECLK NQAVNIGGHA VDGCGEFMPA
101: GIEGTIDALK CAACGCHRNF HRKELPYFHH APPQHQPPPP PPGFYRLPAP VSYRPPPSQA PPLQLALPPP QRERSEDPME TSSAEAGGGI RKRHRTKFTA
201: EQKERMLALA ERIGWRIQRQ DDEVIQRFCQ ETGVPRQVLK VWLHNNKHTL GKSPSPLHHH QAPPPPPPQS SFHHEQDQP

Arabidopsis Description

ZHD1Zinc-finger homeodomain protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKP8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.