Factsheet for Os09t0466400-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 19621931

msms PMID: 19621931 doi

T Aki, S Yanagisawa

Department of Applied Biological Chemistry, The University of Tokyo, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0635550-00
Os02t0706600-00
Os03t0718500-00
Os05t0579300-01
Os07t0137900-01
Os08t0438400-01
Os08t0479400-01
Os09t0414600-02
Os09t0466400-01
Os11t0243300-01
Os12t0208900-00

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G65410.1	Os11t0243300-01	AT1G14440.1	16428600
AT5G65410.1	Os12t0208900-00	AT1G14440.1	16428600
AT5G65410.1	Os01t0635550-00	AT1G75240.1	16428600
AT5G65410.1	Os02t0706600-00	AT1G75240.1	16428600
AT5G65410.1	Os05t0579300-01	AT1G75240.1	16428600
AT5G65410.1	Os01t0635550-00	AT2G18350.1	16428600
AT5G65410.1	Os02t0706600-00	AT2G18350.1	16428600
AT5G65410.1	Os05t0579300-01	AT2G18350.1	16428600
AT5G65410.1	Os01t0635550-00	AT3G50890.1	16428600
AT5G65410.1	Os02t0706600-00	AT3G50890.1	16428600
AT5G65410.1	Os05t0579300-01	AT3G50890.1	16428600
AT5G65410.1	Os08t0438400-01	AT5G15210.1	16428600
AT5G65410.1	Os09t0414600-02	AT5G15210.1	16428600
AT5G65410.1	Os03t0718500-00	AT5G42780.1	16428600
AT5G65410.1	Os07t0137900-01	AT5G42950.1	16120600
AT5G65410.1	Os08t0479400-01	AT5G65410.1	16428600
AT5G65410.1	Os09t0466400-01	AT5G65410.1	16428600

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G253100.1	Wheat	nucleus	86.74	81.76
TraesCS5B01G243800.1	Wheat	nucleus	86.38	81.14
HORVU5Hr1G069730.1	Barley	nucleus	86.74	80.13
TraesCS5A01G246500.1	Wheat	nucleus	84.95	79.8
Zm00001d020774_P001	Maize	nucleus	76.7	78.39
Os08t0479400-01	Rice	nucleus	81.0	77.93
EER96888	Sorghum	nucleus	81.72	75.5
Zm00001d005931_P001	Maize	nucleus	71.33	69.58
VIT_18s0001g07140.t01	Wine grape	nucleus	56.99	69.13
GSMUA_Achr5P05500_001	Banana	nucleus	55.56	65.13
Solyc04g074990.2.1	Tomato	nucleus	31.9	62.24
VIT_00s0199g00250.t01	Wine grape	nucleus	53.41	61.07
PGSC0003DMT400084919	Potato	nucleus	37.63	60.0
Solyc05g051420.1.1	Tomato	nucleus	35.84	59.88
GSMUA_AchrUn_...	Banana	nucleus	51.61	57.6
KRH74513	Soybean	nucleus	52.33	57.48
KRH45571	Soybean	cytosol, nucleus	40.14	57.44
KRG99446	Soybean	nucleus	51.25	57.2
PGSC0003DMT400096005	Potato	cytosol, mitochondrion, nucleus	29.75	56.46
KRH45572	Soybean	nucleus	39.43	55.56
KRH45573	Soybean	nucleus	39.43	55.56
PGSC0003DMT400033624	Potato	nucleus	47.31	55.0
PGSC0003DMT400060623	Potato	nucleus	45.52	52.26
Solyc04g014260.1.1	Tomato	nucleus	46.24	52.23
KRG90132	Soybean	cytosol	36.56	49.76
KRH69650	Soybean	nucleus	51.25	48.47
KRG90215	Soybean	cytosol	36.56	48.11
KRH45574	Soybean	cytosol	44.44	47.51
Os08t0438100-01	Rice	cytosol	14.7	44.09
KRH71953	Soybean	nucleus	40.14	43.75
KRG90210	Soybean	nucleus	40.14	43.75
CDY54719	Canola	nucleus	37.28	43.15
Os11t0128300-01	Rice	cytosol, plastid	16.13	42.86
Bra037816.1-P	Field mustard	nucleus	36.92	42.56
KRG90213	Soybean	nucleus	38.71	42.35
KRH71954	Soybean	nucleus	37.28	42.11
KRG90211	Soybean	cytosol	38.71	42.02
CDX81284	Canola	nucleus	37.63	41.18
Os12t0124500-01	Rice	cytosol, plastid	15.41	40.95
CDY33960	Canola	nucleus	38.71	40.15
CDY37827	Canola	nucleus	39.07	40.07
Bra031859.1-P	Field mustard	nucleus	39.07	40.07
AT5G65410.1	Thale cress	nucleus	39.78	39.78
Bra024382.1-P	Field mustard	nucleus	39.78	37.88
CDY14559	Canola	nucleus	39.78	37.88
Os09t0414600-02	Rice	nucleus	14.34	36.7
Os01t0635550-00	Rice	nucleus	30.11	36.21
Os05t0579300-01	Rice	nucleus	31.54	34.51
Os04t0434500-00	Rice	nucleus	31.18	30.63
Os12t0208900-00	Rice	nucleus	23.3	29.28
Os03t0718500-00	Rice	mitochondrion, nucleus, peroxisome	24.73	28.99
Os11t0243300-01	Rice	cytosol, mitochondrion, nucleus, plastid	40.86	27.34
Os08t0438400-01	Rice	plastid	29.75	24.56
Os02t0706600-00	Rice	nucleus	35.48	23.18

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.13	EntrezGene:4347315	EMBL:AK108246	ProteinID:BAD17515.1	ProteinID:BAF25333.1
ProteinID:BAT08521.1	ProteinID:EEE69868.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0046872
InterPro:Homeobox-like_sf	InterPro:Homeodomain_ZF_HD	InterPro:IPR006456	EnsemblPlantsGene:Os09g0466400	EnsemblPlants:Os09t0466400-01	PFAM:PD125774
PFAM:PF04770	PFscan:PS51523	PANTHER:PTHR31948	PANTHER:PTHR31948:SF25	UniProt:Q6YXH5	SUPFAM:SSF46689
TIGRFAMs:TIGR01565	TIGRFAMs:TIGR01566	UniParc:UPI000035AF1F	RefSeq:XP_015610854.1	InterPro:ZF_HD_homeobox_Cys/His_dimer	SEG:seg

Description

zinc finger homeodomain class homeobox transcription factor 1Zinc finger homeodomain (ZF-HD) class homeobox transcription factor, Rice morphogenesis, Modulation of leaf rolling (Os09t0466400-01)

Coordinates

chr9:-:17704077..17705245

Molecular Weight (calculated)

29542.7 Da

IEP (calculated)

7.482

GRAVY (calculated)

-0.591

Length

279 amino acids

Sequence
(BLAST)

001: MDFDDHDDGD EEMPPMPVSS SYETPPQHGL AGGGMAPKPP GEIGSRVKGP SCGGGRYREC LKNHAVGIGG HAVDGCGEFM AAGEEGTIDA LRCAACNCHR
101: NFHRKESESL AGEGSPFSPA AVVPYGATPH HQFSPYYRTP AGYLHHHQHH MAAAAAAAAA AAGGYPQRPL ALPSTSHSGR DDGDDLSGMV GPMSAVGPLS
201: GMSLGAGPSG SGSGKKRFRT KFTQEQKDKM LAFAERVGWR IQKHDEAAVQ QFCDEVGVKR HVLKVWMHNN KHTLGKKLP

Best Arabidopsis Sequence Match ( AT4G24660.1 )
(BLAST)

001: MNFEDQEEDM EMSGVNPPCG YDSLSGEGAT SSGGGGVGRS KGVGAKIRYR ECLKNHAVNI GGHAVDGCCE FMPSGEDGTL DALKCAACGC HRNFHRKETE
101: SIGGRAHRVP TYYNRPPQPH QPPGYLHLTS PAAPYRPPAA SGDEEDTSNP SSSGGTTKRF RTKFTAEQKE KMLAFAERLG WRIQKHDDVA VEQFCAETGV
201: RRQVLKIWMH NNKNSLGKKP

Arabidopsis Description

ATHB22homeobox protein 22 [Source:TAIR;Acc:AT4G24660]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.