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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 3
  • cytosol 1
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
Bra004399.1-P
Bra007869.1-P
Bra008185.1-P
Bra008712.1-P
Bra012882.1-P
Bra015857.1-P
Bra024382.1-P
Bra025363.1-P
Bra025644.1-P
Bra026219.1-P
Bra026812.1-P
Bra026830.1-P
Bra027455.1-P
Bra027468.1-P
Bra031859.1-P
Bra036852.1-P
Bra037224.1-P
Bra037816.1-P
Bra039038.1-P

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G65410.1 Bra026219.1-P AT1G14440.1 16428600
AT5G65410.1 Bra026830.1-P AT1G14440.1 16428600
AT5G65410.1 Bra026812.1-P AT1G14687.1 16428600
AT5G65410.1 Bra004399.1-P AT1G69600.1 16428600
AT5G65410.1 Bra007869.1-P AT1G69600.1 16428600
AT5G65410.1 Bra008185.1-P AT1G75240.1 16428600
AT5G65410.1 Bra015857.1-P AT1G75240.1 16428600
AT5G65410.1 Bra037224.1-P AT2G18350.1 16428600
AT5G65410.1 Bra025363.1-P AT3G28920.1 16428600
AT5G65410.1 Bra039038.1-P AT3G28920.1 16428600
AT5G65410.1 Bra012882.1-P AT3G50890.1 16428600
AT5G65410.1 Bra036852.1-P AT3G50890.1 16428600
AT5G65410.1 Bra008712.1-P AT5G15210.1 16428600
AT5G65410.1 Bra025644.1-P AT5G39760.1 16428600
AT5G65410.1 Bra025644.1-P AT5G39760.1 21798944
AT5G65410.1 Bra027455.1-P AT5G42780.1 16428600
AT5G65410.1 Bra027468.1-P AT5G42950.1 16120600
AT5G65410.1 Bra024382.1-P AT5G65410.1 16428600
AT5G65410.1 Bra031859.1-P AT5G65410.1 16428600
AT5G65410.1 Bra037816.1-P AT5G65410.1 16428600
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY14559 Canola nucleus 97.95 97.95
Bra031859.1-P Field mustard nucleus 84.98 91.54
AT5G65410.1 Thale cress nucleus 85.67 89.96
Bra037816.1-P Field mustard nucleus 72.35 87.6
Bra031051.1-P Field mustard mitochondrion 15.36 51.14
GSMUA_Achr7P19060_001 Banana nucleus 35.84 50.97
Solyc05g051420.1.1 Tomato nucleus 27.99 49.1
Bra025688.1-P Field mustard mitochondrion 14.68 48.86
PGSC0003DMT400084919 Potato nucleus 29.01 48.57
GSMUA_Achr6P02170_001 Banana nucleus 38.23 48.48
Bra013822.1-P Field mustard nucleus 37.2 48.44
GSMUA_Achr3P20390_001 Banana nucleus 34.13 48.31
Bra010485.1-P Field mustard nucleus 34.13 47.62
GSMUA_Achr10P... Banana nucleus 36.52 46.72
GSMUA_Achr5P05500_001 Banana nucleus 37.88 46.64
Bra016538.1-P Field mustard mitochondrion 13.99 46.59
Bra003791.1-P Field mustard mitochondrion 15.36 46.39
VIT_00s0199g00250.t01 Wine grape nucleus 38.23 45.9
PGSC0003DMT400096005 Potato cytosol, mitochondrion, nucleus 22.87 45.58
Bra015898.1-P Field mustard mitochondrion 14.33 44.68
KRH74513 Soybean nucleus 37.54 43.31
Bra006657.1-P Field mustard nucleus 25.6 41.21
PGSC0003DMT400060623 Potato nucleus 34.13 41.15
Zm00001d020774_P001 Maize nucleus 38.23 41.03
GSMUA_AchrUn_... Banana nucleus 34.47 40.4
Solyc04g014260.1.1 Tomato nucleus 33.79 40.08
Bra039039.1-P Field mustard mitochondrion 13.31 39.8
Os09t0466400-01 Rice nucleus 37.88 39.78
Os08t0479400-01 Rice nucleus 39.25 39.66
Zm00001d005931_P001 Maize nucleus 38.57 39.51
Bra025362.1-P Field mustard mitochondrion 13.31 39.0
EER96888 Sorghum nucleus 39.25 38.08
KRH69650 Soybean nucleus 38.23 37.97
Zm00001d031840_P001 Maize nucleus 39.59 37.66
EES15144 Sorghum nucleus 39.59 37.3
Bra036852.1-P Field mustard nucleus 27.65 36.99
TraesCS5D01G253100.1 Wheat nucleus 36.18 35.81
TraesCS5B01G243800.1 Wheat nucleus 36.18 35.69
HORVU5Hr1G069730.1 Barley nucleus 36.52 35.43
TraesCS5A01G246500.1 Wheat nucleus 35.49 35.02
Bra004399.1-P Field mustard nucleus 27.3 34.63
Bra007869.1-P Field mustard nucleus 26.96 34.35
Bra008185.1-P Field mustard nucleus 32.42 32.31
Bra008712.1-P Field mustard cytosol 28.33 31.56
Bra015857.1-P Field mustard nucleus 32.42 31.46
Bra026589.1-P Field mustard nucleus 32.08 31.33
Bra003759.1-P Field mustard nucleus 31.06 30.95
Bra026219.1-P Field mustard nucleus 32.42 30.65
Bra026830.1-P Field mustard nucleus 32.76 30.57
Bra037224.1-P Field mustard nucleus 26.96 29.81
Bra039038.1-P Field mustard nucleus 31.4 29.77
Bra012882.1-P Field mustard nucleus 25.26 27.92
Bra025644.1-P Field mustard nucleus 29.35 27.13
Bra025363.1-P Field mustard nucleus 31.06 26.45
Bra027455.1-P Field mustard nucleus 22.87 23.34
Bra039615.1-P Field mustard cytosol 12.63 20.44
Protein Annotations
Gene3D:1.10.10.60MapMan:15.5.3.13EnsemblPlantsGene:Bra024382EnsemblPlants:Bra024382.1EnsemblPlants:Bra024382.1-Pncoils:Coil
GO:GO:0003674GO:GO:0003676GO:GO:0003677GO:GO:0005488InterPro:Homeobox-like_sfInterPro:Homeodomain_ZF_HD
InterPro:IPR006456InterPro:IPR013087UniProt:M4E6H8PFAM:PD125774PFAM:PF04770ScanProsite:PS00028
PFscan:PS51523PANTHER:PTHR31948PANTHER:PTHR31948:SF5SUPFAM:SSF46689TIGRFAMs:TIGR01565TIGRFAMs:TIGR01566
UniParc:UPI000253F50BInterPro:ZF_HD_homeobox_Cys/His_dimerInterPro:Znf_C2H2_typeSEG:seg::
Description
AT5G65410 (E=7e-080) ATHB25, ZFHD2, HB25 | HB25 (HOMEOBOX PROTEIN 25); DNA binding / sequence-specific DNA binding / transcription factor/ transcription regulator
Coordinates
chrA06:+:15398158..15399039
Molecular Weight (calculated)
32374.6 Da
IEP (calculated)
6.298
GRAVY (calculated)
-0.983
Length
293 amino acids
Sequence
(BLAST)
001: MDFEDNNNNN NEEEDEMNLH EEEEEEDDAV YDSPPLPPPS RVLKTSTESP DTAGTTSTGG GGFMVVHGGS SGGGGGSRFR FRECLKNQAV NIGGHAVDGC
101: GEFMPAGIEG TIDALKCAAC GCHRNFHRKE LPYFHHHAPP HQPPPPPPPP GFYRLPAPVS YRPPPSQAPP LQLALPPPPQ RERSEDRMET SSAEAGGGSG
201: IRKRFRTKFT PEQKERMLAL AESIGWRIQR QDDEVIQRFC QETGVPRQVL KVWLHNNKHT LGKSSSPPLH QHQNPTLPHP PQPSSFHHEQ DQP
Best Arabidopsis Sequence Match ( AT5G65410.1 )
(BLAST)
001: MEFEDNNNNN DEEQEEDMNL HEEEEDDDAV YDSPPLSRVL PKASTESHET TGTTSTGGGG GFMVVHGGGG SRFRFRECLK NQAVNIGGHA VDGCGEFMPA
101: GIEGTIDALK CAACGCHRNF HRKELPYFHH APPQHQPPPP PPGFYRLPAP VSYRPPPSQA PPLQLALPPP QRERSEDPME TSSAEAGGGI RKRHRTKFTA
201: EQKERMLALA ERIGWRIQRQ DDEVIQRFCQ ETGVPRQVLK VWLHNNKHTL GKSPSPLHHH QAPPPPPPQS SFHHEQDQP
Arabidopsis Description
ZHD1Zinc-finger homeodomain protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKP8]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.