Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plasma membrane 1
- cytosol 1
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra010432.1-P | |
| Bra024382.1-P | |
| Bra026415.1-P | |
| Bra031859.1-P | |
| Bra037816.1-P |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT5G42950.1 | Thale cress | cytosol | 72.86 | 71.12 |
| CDY32971 | Canola | nucleus | 79.32 | 64.67 |
| Solyc04g080240.2.1 | Tomato | cytosol | 41.12 | 39.77 |
| VIT_18s0001g12350.t01 | Wine grape | cytosol | 43.51 | 39.65 |
| PGSC0003DMT400013161 | Potato | cytosol | 40.41 | 39.42 |
| KRH05805 | Soybean | endoplasmic reticulum | 41.78 | 39.2 |
| KRH61182 | Soybean | cytosol | 39.39 | 36.9 |
| KRH51860 | Soybean | cytosol | 39.09 | 36.45 |
| KRH15224 | Soybean | endoplasmic reticulum | 40.53 | 36.03 |
| GSMUA_Achr4P28310_001 | Banana | cytosol | 31.98 | 33.78 |
| GSMUA_Achr2P13140_001 | Banana | cytosol | 32.7 | 32.2 |
| EER95850 | Sorghum | cytosol | 30.36 | 30.83 |
| TraesCS2A01G255000.2 | Wheat | nucleus | 30.36 | 29.86 |
| TraesCS2B01G267200.2 | Wheat | nucleus | 30.25 | 29.69 |
| TraesCS2D01G255400.2 | Wheat | nucleus | 30.13 | 29.63 |
| Zm00001d018770_P003 | Maize | cytosol | 30.3 | 29.49 |
| Os07t0137900-01 | Rice | cytosol | 18.95 | 28.18 |
| Zm00001d034263_P004 | Maize | cytosol | 15.06 | 25.53 |
| OQU90902 | Sorghum | nucleus | 18.71 | 25.45 |
| Bra010950.1-P | Field mustard | cytosol | 12.43 | 16.43 |
| Bra010951.1-P | Field mustard | cytosol | 9.44 | 14.92 |
Protein Annotations
| MapMan:26.10.3.1 | Gene3D:3.30.1490.40 | EnsemblPlantsGene:Bra027468 | EnsemblPlants:Bra027468.1 | EnsemblPlants:Bra027468.1-P | ncoils:Coil |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003729 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0006950 | GO:GO:0008150 | GO:GO:0009605 | GO:GO:0009607 | GO:GO:0009719 | GO:GO:0009737 |
| GO:GO:0051607 | InterPro:GYF | InterPro:GYF-like_dom_sf | InterPro:IPR003169 | InterPro:IPR035445 | UniProt:M4EFA6 |
| PFAM:PF02213 | PFscan:PS50829 | PANTHER:PTHR14445 | PANTHER:PTHR14445:SF36 | SMART:SM00444 | SUPFAM:SSF55277 |
| UniParc:UPI0002542154 | SEG:seg | : | : | : | : |
Description
AT5G42950 (E=0.0) | GYF domain-containing protein
Coordinates
chrA09:-:14101974..14108263
Molecular Weight (calculated)
182277.0 Da
IEP (calculated)
7.014
GRAVY (calculated)
-0.865
Length
1673 amino acids
Sequence
(BLAST)
(BLAST)
0001: MANSSADSAA DHRSKHLSIN PPHQIFKDVQ GSDNPIPLSP QWLLSKSGKS KAGMGTVEAQ GLHNPSGNGE ETPDNPKKKD VFRPSLLTAE TGRREGWRDE
0101: ERDTFSAARN DRWRNGDKDF GDSKKVDRRD NVGSRQFGEP RRWTDSGNKD AGTEQRRGPS DRWTDSGNKD AGTEQRRESK WNSRWGPDDK EAENARNKWD
0201: EAGKDGEIIR EKGPSLPSSD GDHYRPWRPS QGRGRGESLH SQSTPNKQGT AFSHSRGRGE NTAIFSAGRG RMSSGGSLFT NQSHPPGSAS EKGESGTGEP
0301: YHLRYSRMKL LDVYRIADTV CFEKFPDGFI EVPSLTCEQP SDPLAICAPS SEEVNILDGI EKGKIVSSGA PQISKDGPSG RNPAEFSQPR RLKPAGSRED
0401: MTSAADVSKE ESGETRNYPD DKFRPEASHE GYAPFRKGNE VQGNNHVQSP WRQPGERSSR ISHDWNDPSA DNKLKSSDSV WSHPKDSINH SGSSVMSLPQ
0501: SKGESRWQIG EDPALRRQPS LVFDREREVR KPMPSSPEEL SLFYKDPQGL IQGPFSGSDI IGWFEAGYFG IDLLVRPASA PIDSPFSLLG DVMPHLRAKS
0601: GPPPGFSDAK PSQTIDAAGS PAFPGVGKVH TGMGETDMLQ NDMRYKQVGG TVAENRFIES LMSGSLNNPS QGVQGYAVNS SGGLSLPVTD GGADMYLLAK
0701: KLELERQRSV ASPYSYWPGP ESANLMPRSE NVPEVAQQPA RSPSTDLLSI LQGAKDRSAP AVSGPIPAWS HPNQKDDLHH AKSFQTQTSF GVQQQRQLEQ
0801: NSPLAGLLGQ PIGNNPAGML PPDMMLVPGL SQEQQSLNLL QQQQLLLQMN AQTPLSSQQQ RLLIEKMLLL KHQQKREEQQ QLLRQQQQLF SQVLADQQHP
0901: QQRFGEPSYG QLQQSFDALR LQESKDVTQV NQQMQLPVSH EARGANLTDF LSVNQATSQN VAIVGTHHLN LQPQLFGNVD PRMSEGGVPT DQIDGTHKKD
1001: LQSDYERSIP ADYMNSLYSE KPVLLPASFP NNESATPETS DSKSLENQTK DVFVGQGEPS NELNVEIPPA EVKSNEVSGG RKTSEKKSKK QRGNKQSAEP
1101: VKAASKSSLQ EAKQPETGIS DDSEIKGKNM NPADTLIDND VLMSSEAISV RGESGVNESS LQNTRTQPGR AWKPAPGFKP KSLLEIQMEE QRVAQAEALA
1201: PKVSTSSGSV GGLASPWGGI VTNSDPINLR ETLGESVKTQ TGAVKPESVP ALKGKQSHLL ADDVVAKSVV KERDVVGSSS NDTYTQVTST NAESLDDDNF
1301: IDAKETKKSR KKSARAKNSA AKTAAHVPAV VDTSLSTSSI EKGKNARIAQ QQLKEDLPAI PSGPSLGDFV LWKEEPVNNP SPAAAWSTGP KKSTKPSSLR
1401: DIVREQEKMT TSSHPSPSPV PTIQKPTPQA VPQSSWSRSP SQAVSQSSLQ SKSKGDDDLF WGPVEQTTQE SKQGDFPQLS SQNSWGTKTT PGKGSAGSSL
1501: NRQKSVSASS PASHKGKKEE VTKLTEANGF RDWCRSECLR LLGSEDTSVL EFCLKLSRSE AETLLIENLG TVDRDHKFID KFLNYKDLLP SEVVEIAFQS
1601: KGSSSSVVKS RNNKAAEEEE YYKAPSANEG FSKVGGGKKK GKKGKKVSLS SSVLGFNVVS NRIMMGEIQS IED
0101: ERDTFSAARN DRWRNGDKDF GDSKKVDRRD NVGSRQFGEP RRWTDSGNKD AGTEQRRGPS DRWTDSGNKD AGTEQRRESK WNSRWGPDDK EAENARNKWD
0201: EAGKDGEIIR EKGPSLPSSD GDHYRPWRPS QGRGRGESLH SQSTPNKQGT AFSHSRGRGE NTAIFSAGRG RMSSGGSLFT NQSHPPGSAS EKGESGTGEP
0301: YHLRYSRMKL LDVYRIADTV CFEKFPDGFI EVPSLTCEQP SDPLAICAPS SEEVNILDGI EKGKIVSSGA PQISKDGPSG RNPAEFSQPR RLKPAGSRED
0401: MTSAADVSKE ESGETRNYPD DKFRPEASHE GYAPFRKGNE VQGNNHVQSP WRQPGERSSR ISHDWNDPSA DNKLKSSDSV WSHPKDSINH SGSSVMSLPQ
0501: SKGESRWQIG EDPALRRQPS LVFDREREVR KPMPSSPEEL SLFYKDPQGL IQGPFSGSDI IGWFEAGYFG IDLLVRPASA PIDSPFSLLG DVMPHLRAKS
0601: GPPPGFSDAK PSQTIDAAGS PAFPGVGKVH TGMGETDMLQ NDMRYKQVGG TVAENRFIES LMSGSLNNPS QGVQGYAVNS SGGLSLPVTD GGADMYLLAK
0701: KLELERQRSV ASPYSYWPGP ESANLMPRSE NVPEVAQQPA RSPSTDLLSI LQGAKDRSAP AVSGPIPAWS HPNQKDDLHH AKSFQTQTSF GVQQQRQLEQ
0801: NSPLAGLLGQ PIGNNPAGML PPDMMLVPGL SQEQQSLNLL QQQQLLLQMN AQTPLSSQQQ RLLIEKMLLL KHQQKREEQQ QLLRQQQQLF SQVLADQQHP
0901: QQRFGEPSYG QLQQSFDALR LQESKDVTQV NQQMQLPVSH EARGANLTDF LSVNQATSQN VAIVGTHHLN LQPQLFGNVD PRMSEGGVPT DQIDGTHKKD
1001: LQSDYERSIP ADYMNSLYSE KPVLLPASFP NNESATPETS DSKSLENQTK DVFVGQGEPS NELNVEIPPA EVKSNEVSGG RKTSEKKSKK QRGNKQSAEP
1101: VKAASKSSLQ EAKQPETGIS DDSEIKGKNM NPADTLIDND VLMSSEAISV RGESGVNESS LQNTRTQPGR AWKPAPGFKP KSLLEIQMEE QRVAQAEALA
1201: PKVSTSSGSV GGLASPWGGI VTNSDPINLR ETLGESVKTQ TGAVKPESVP ALKGKQSHLL ADDVVAKSVV KERDVVGSSS NDTYTQVTST NAESLDDDNF
1301: IDAKETKKSR KKSARAKNSA AKTAAHVPAV VDTSLSTSSI EKGKNARIAQ QQLKEDLPAI PSGPSLGDFV LWKEEPVNNP SPAAAWSTGP KKSTKPSSLR
1401: DIVREQEKMT TSSHPSPSPV PTIQKPTPQA VPQSSWSRSP SQAVSQSSLQ SKSKGDDDLF WGPVEQTTQE SKQGDFPQLS SQNSWGTKTT PGKGSAGSSL
1501: NRQKSVSASS PASHKGKKEE VTKLTEANGF RDWCRSECLR LLGSEDTSVL EFCLKLSRSE AETLLIENLG TVDRDHKFID KFLNYKDLLP SEVVEIAFQS
1601: KGSSSSVVKS RNNKAAEEEE YYKAPSANEG FSKVGGGKKK GKKGKKVSLS SSVLGFNVVS NRIMMGEIQS IED
0001: MANSSAGSAA DHRNKHLSVN PPHQIFKDIQ GSDNAIPLSP QWLLSKPGEN KTGMGTGDPN QYGNHSDVVR TTGNGEETLD NLKKKDVFRP SLLDAESGRR
0101: DRWRDEERDT LSSVRNDRWR NGDKDSGDNK KVDRWDNVAP KFGEQRRGPN DRWTDSGNKD AAPEQRRESK WNSRWGPDDK EAEIPRNKWD EPGKDGEIIR
0201: EKGPSLPTSD GDHYRPWRPS QGRGRGEALH NQSTPNKQVT SFSHSRGRGE NTAIFSAGRG RMSPGGSIFT SAPNQSHPPG SASDKGESGP GEPPHLRYSR
0301: MKLLDVYRMA DTECYEKFPD GFIEVPSLTS EEPTDPLALC APSSDEVNVL DAIEKGKIVS SGAPQTSKDG PTGRNPVEFS QPRRIRPAGS REDMTFGAEE
0401: SKDESGETRN YPDDKFRPEA SHEGYAPFRR GNEAPVRELK EPSMQGNAHV QSASPWRQSS GGERSNRNSH DWNDPSADSR LKSSDSVWSH PKDSINHLGG
0501: NNMMLPQSKG ESRWQISEDP SLRRQPSLVF DREQEVRKLL PSSPEELSLY YKDPQGLIQG PFSGSDIIGW FEAGYFGIDL LVRLASAPND SPFSLLGDVM
0601: PHLRAKSGPP PGFTGAKQNE FVDAAGTSAF PGVGKVHSGM GETDMLQNDM RYKHVAGTVA ENRFIESLMS GGLTNSAQGV QGYGVNSSGG LSLPVTDGGA
0701: DMYLLAKKLE LERQRSIPSP YSYWPGRESA NLMPGSENVS ENAQQPTRSP SSDLLSILQG VTDRSSPAVS GPLPAWSQPI QKESDLHHAK TFQTQIPFGV
0801: QQQRLPEQNL PLSGLLGQPM ENNPGGMLSP DMMLAAGLSQ EHQSLNLLQQ QQLLLQLNAQ TPLSAQHQRL LVEKMLLLKH QHKQEEQQQL LRQQQQLYSQ
0901: VFADQQRSQQ RFGDPSYGQL QASLDALRLQ PSKDMSQVNQ QVQVPVSHEE RGINLADLLP VTHATNQTVA SFETPSLHLQ NQLFGNVDPR MVLPDQIDDT
1001: HKKESKSEYE RTVSADYVNS LYSEKPVLSP GYHATHNVEE PVSYPNNESS TATMTAPEIV ESKLLEEQSK DMYAGKGEVS IELSGETPAT EVKNNDVSVA
1101: RKTSEKKSRK QRAKQAADLA KSTSRAPLQE TKKPQPGSAD DSEIKGKTKK SADTLIDNDT HLIKSSTATA SNTSQMSSEV DSVRGEESSL QNTRTQPGRA
1201: WKPAPGFKPK SLLEIQMEEQ RVAQAEALAP KISSTVNSVG SAAPWAGIVT NSDSNILRET HGESAITQTG VVKPESVPTL KAKKSHLHDL LADDVFAKSS
1301: DKEREVMEII SNNDAFMQVT TTNAESFDDD NFIDARETKK SRKKSARAKT SGAKIAAHVP AVDTSLQTNS VEKGKSSRIL QQQEKEVLPA IPSGPSLGDF
1401: VLWKGESVNN PPPAAAWSSG PKKSTKPSSL RDIVKEQEKM TTSSHPPPSP VPTTQKAIPP QAHQGGASWS RSASSPSQAV SQSSSQSKSK GDDDLFWGPV
1501: EQSTQDTKQG DFPHLTSQNS WGTKNTPGKV NAGTSLNRQK SVSMGSADRV LSSPVVTQAS HKGKKEAVTK LTEANGFRDW CKSECLRLLG SEDTSVLEFC
1601: LKLSRSEAET LLIENLGSRD PDHKFIDKFL NYKDLLPSEV VEIAFQSKGS GVGTRNNTGE DYYYNTTAAN DGFSKVGGKK KAKKGKKVSL SASVLGFNVV
1701: SNRIMMGEIQ TIED
0101: DRWRDEERDT LSSVRNDRWR NGDKDSGDNK KVDRWDNVAP KFGEQRRGPN DRWTDSGNKD AAPEQRRESK WNSRWGPDDK EAEIPRNKWD EPGKDGEIIR
0201: EKGPSLPTSD GDHYRPWRPS QGRGRGEALH NQSTPNKQVT SFSHSRGRGE NTAIFSAGRG RMSPGGSIFT SAPNQSHPPG SASDKGESGP GEPPHLRYSR
0301: MKLLDVYRMA DTECYEKFPD GFIEVPSLTS EEPTDPLALC APSSDEVNVL DAIEKGKIVS SGAPQTSKDG PTGRNPVEFS QPRRIRPAGS REDMTFGAEE
0401: SKDESGETRN YPDDKFRPEA SHEGYAPFRR GNEAPVRELK EPSMQGNAHV QSASPWRQSS GGERSNRNSH DWNDPSADSR LKSSDSVWSH PKDSINHLGG
0501: NNMMLPQSKG ESRWQISEDP SLRRQPSLVF DREQEVRKLL PSSPEELSLY YKDPQGLIQG PFSGSDIIGW FEAGYFGIDL LVRLASAPND SPFSLLGDVM
0601: PHLRAKSGPP PGFTGAKQNE FVDAAGTSAF PGVGKVHSGM GETDMLQNDM RYKHVAGTVA ENRFIESLMS GGLTNSAQGV QGYGVNSSGG LSLPVTDGGA
0701: DMYLLAKKLE LERQRSIPSP YSYWPGRESA NLMPGSENVS ENAQQPTRSP SSDLLSILQG VTDRSSPAVS GPLPAWSQPI QKESDLHHAK TFQTQIPFGV
0801: QQQRLPEQNL PLSGLLGQPM ENNPGGMLSP DMMLAAGLSQ EHQSLNLLQQ QQLLLQLNAQ TPLSAQHQRL LVEKMLLLKH QHKQEEQQQL LRQQQQLYSQ
0901: VFADQQRSQQ RFGDPSYGQL QASLDALRLQ PSKDMSQVNQ QVQVPVSHEE RGINLADLLP VTHATNQTVA SFETPSLHLQ NQLFGNVDPR MVLPDQIDDT
1001: HKKESKSEYE RTVSADYVNS LYSEKPVLSP GYHATHNVEE PVSYPNNESS TATMTAPEIV ESKLLEEQSK DMYAGKGEVS IELSGETPAT EVKNNDVSVA
1101: RKTSEKKSRK QRAKQAADLA KSTSRAPLQE TKKPQPGSAD DSEIKGKTKK SADTLIDNDT HLIKSSTATA SNTSQMSSEV DSVRGEESSL QNTRTQPGRA
1201: WKPAPGFKPK SLLEIQMEEQ RVAQAEALAP KISSTVNSVG SAAPWAGIVT NSDSNILRET HGESAITQTG VVKPESVPTL KAKKSHLHDL LADDVFAKSS
1301: DKEREVMEII SNNDAFMQVT TTNAESFDDD NFIDARETKK SRKKSARAKT SGAKIAAHVP AVDTSLQTNS VEKGKSSRIL QQQEKEVLPA IPSGPSLGDF
1401: VLWKGESVNN PPPAAAWSSG PKKSTKPSSL RDIVKEQEKM TTSSHPPPSP VPTTQKAIPP QAHQGGASWS RSASSPSQAV SQSSSQSKSK GDDDLFWGPV
1501: EQSTQDTKQG DFPHLTSQNS WGTKNTPGKV NAGTSLNRQK SVSMGSADRV LSSPVVTQAS HKGKKEAVTK LTEANGFRDW CKSECLRLLG SEDTSVLEFC
1601: LKLSRSEAET LLIENLGSRD PDHKFIDKFL NYKDLLPSEV VEIAFQSKGS GVGTRNNTGE DYYYNTTAAN DGFSKVGGKK KAKKGKKVSL SASVLGFNVV
1701: SNRIMMGEIQ TIED
Arabidopsis Description
GYF domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q9FMM3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.