Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_00s0199g00250.t01 | |
| VIT_19s0015g00430.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G42950.1 | VIT_19s0015g00430.t01 | AT4G26630.1 | 25387881 |
| AT5G42950.1 | VIT_00s0199g00250.t01 | AT5G65410.1 | 16120600 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400013161 | Potato | cytosol | 49.51 | 53.0 |
| Solyc04g080240.2.1 | Tomato | cytosol | 48.97 | 51.97 |
| KRH05805 | Soybean | endoplasmic reticulum | 50.27 | 51.77 |
| KRH61182 | Soybean | cytosol | 48.04 | 49.38 |
| KRH51860 | Soybean | cytosol | 47.93 | 49.05 |
| KRH15224 | Soybean | endoplasmic reticulum | 49.62 | 48.41 |
| AT5G42950.1 | Thale cress | cytosol | 42.65 | 45.68 |
| Bra027468.1-P | Field mustard | nucleus | 39.65 | 43.51 |
| GSMUA_Achr4P28310_001 | Banana | cytosol | 35.73 | 41.41 |
| GSMUA_Achr2P13140_001 | Banana | cytosol | 36.6 | 39.55 |
| EER95850 | Sorghum | cytosol | 31.81 | 35.44 |
| TraesCS2B01G267200.2 | Wheat | nucleus | 32.52 | 35.04 |
| TraesCS2D01G255400.2 | Wheat | nucleus | 32.35 | 34.92 |
| TraesCS2A01G255000.2 | Wheat | nucleus | 32.3 | 34.86 |
| Zm00001d018770_P003 | Maize | cytosol | 30.88 | 32.98 |
| Os07t0137900-01 | Rice | cytosol | 19.55 | 31.91 |
| CDY71257 | Canola | cytosol, nucleus | 8.66 | 29.72 |
| OQU90902 | Sorghum | nucleus | 19.34 | 28.86 |
| Zm00001d034263_P004 | Maize | cytosol | 14.87 | 27.66 |
| VIT_01s0146g00140.t01 | Wine grape | nucleus | 11.38 | 22.09 |
| VIT_14s0068g01650.t01 | Wine grape | nucleus | 16.34 | 18.02 |
Protein Annotations
| EntrezGene:100262487 | wikigene:100262487 | MapMan:26.10.3.1 | Gene3D:3.30.1490.40 | ProteinID:CCB45939 | ProteinID:CCB45939.1 |
| ncoils:Coil | UniProt:F6H1I0 | EMBL:FN595227 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:GYF | InterPro:GYF-like_dom_sf | InterPro:IPR003169 | InterPro:IPR035445 | EntrezGene:LOC100262487 | wikigene:LOC100262487 |
| PFAM:PF02213 | PFscan:PS50829 | PANTHER:PTHR14445 | PANTHER:PTHR14445:SF36 | SMART:SM00444 | SUPFAM:SSF55277 |
| TIGR:TC57772 | UniParc:UPI0001985313 | ArrayExpress:VIT_18s0001g12350 | EnsemblPlantsGene:VIT_18s0001g12350 | EnsemblPlants:VIT_18s0001g12350.t01 | unigene:Vvi.7373 |
| RefSeq:XP_002281503 | RefSeq:XP_002281503.1 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr18:-:10529532..10547324
Molecular Weight (calculated)
201463.0 Da
IEP (calculated)
6.337
GRAVY (calculated)
-0.835
Length
1836 amino acids
Sequence
(BLAST)
(BLAST)
0001: MADRTDSDSR HNLTLTTPHQ ISKDVQGSDN PIPLSPQWLL PKPGENKHGM VTGENHFGPY PGYANRADTM KSSGNGDGML DSLKKKDVFR PTLPDMETGR
0101: RDRWRDEERD TNSSIRRDRW REGDKELSDT RKMDRWTENS STRHFGEARR GPSERWNDSS NRETNYDQRR ESKWNTRWGP DDKDTEGLRE KWMDSSRDGE
0201: MPLDKGLSTN HGKDERDGDL YRPWRPNSLQ SRGRAEPSHH QSLTPNKQVH TFSYARGRGE NPPPTFALGR GRVNSGGNLM NNYSTISQSL GTVSDKCESG
0301: HGEPSPLRYN RTKLLDVYRM TDIRSSGKLL DGFVQVPSLS QEEPLEPLAL CAPTSEELVI LKGIDKGDIV SSGAPQISKE GSIGRNSEFL PSRRTKPGSR
0401: EDLPLAVDDS KDESNDNSKG GYSSYSDGSP YEKQMHYYGS NSKMEAMVDH QMYPDNKFHA EALREDGTPY RKSDEVPINR DLSMHGNSSI HPGNTWRAPS
0501: LGERSHTVTH DRRDIPTDVR SVPSDMGWAQ PKKEMNSEWT SGLANPPYSK DELKWQISED PIIKRQASLV LDREPEARKL SQPSPEDMVL YYKDPQGEIQ
0601: GPFSGSDIIG WFEAGYFGID LQVRLASAPN DSPFFVLGDV MPHLRAKARP PPGFGVPKQN EITDASSRPN YSSFGNLHAG SSEIDVIKNE PRHKHGSATE
0701: AENRFLESLM SGNMGSPPVE KFAFSEGLQG YIGNNAGGAP PMGVESGNNL YLLAKRMNLE RQRSLPNPYP YWPGRDATSM APKSEMVPDS AAPHPKLLSS
0801: MTDNSRQSSN SNADLMSILQ GISDRSSSGV SNGVTGWSNF PVQGGLDPLQ DKMDLQHGQN FPPQAAFGIQ QQRLQPQNQP SLTNLLAQAM DNPSGILAPE
0901: KLLSSSLPQD PQLLSMLQQQ YLMQLHSQAT VPAQQLLLLD KLLLLKKQEE QQQLLRQQQQ LLSQVLSEHH SNQIFGQAAA MAVGNASVDH SRLQPPQELF
1001: QMPVPAMQDE RATNLASGPP PISQDANYNV SSEGSFLHLP HQMFGNTTHQ KSYGTMLPEQ IDEIQQKEPL PASAVIDSSA LLLSTNLSTE EPSALQNSTL
1101: TSDGQAAENL EKNLQDTLII NEPVTVANSV GGANSVPLKS SGKSIDRSSE GISENKMFND MEVQLDVTPE ELQIEKERCN DEPSLETESK SVEVREVRKA
1201: SEKRTRKQKS SKSQSSSDQA KGVSKTVSLQ QPKQYETEGT IVGNTKPETH ISPGETTSGT SPQKTADKKF GIVSTETVDS QQVNGPSPLG IPRDDSKTAE
1301: GKSEPQLVGS VPVQNAQVHS GQRAWKHAPG FKAKSLLEIQ EEEQRKAKAE MVVSEIPLSV NAVNLPTPWA GVISNSDSKT SREIHQEAAS TELNLGKSES
1401: FHNTKAKKSQ LHDLLAEEVL AKSSERDMKI LDIVSSLPSL PVVSTSLDAI DDDNFIEAKD TKKSRKKSAK AKGVGAKVSA PSASVDISVG SSPVEKGKIS
1501: RLVQQEKEVL PAPPSGPSLG DFVPWKGEHV NPSPAPAWSS DSGKLPKPTS LRDIQKEQGK KASLVQNHVQ IPTPQKSQPT QVTRGSGPSW SISASSPAKA
1601: SPIQIKGEDD LFWGPIDQSK PDSKQVDFPH LASQGSWGTK NTPVKGSPGG SLSRQKSMGG RATEHSLSSS PASAQSSLKG KRDAMSKHSE AMDFRNWCES
1701: ESVRLTGTKD TSFLEFCLKQ SRSEAEILLT ENLNDPNHEF IDKFLNYKEL LSADVLEIAF QSRNDSKATG FSAGDMNSDN LGFGDFERDY SAGADGSMKG
1801: GGKKRGKKGK KVSPAVLGFN VVSNRIMMGE IQSVED
0101: RDRWRDEERD TNSSIRRDRW REGDKELSDT RKMDRWTENS STRHFGEARR GPSERWNDSS NRETNYDQRR ESKWNTRWGP DDKDTEGLRE KWMDSSRDGE
0201: MPLDKGLSTN HGKDERDGDL YRPWRPNSLQ SRGRAEPSHH QSLTPNKQVH TFSYARGRGE NPPPTFALGR GRVNSGGNLM NNYSTISQSL GTVSDKCESG
0301: HGEPSPLRYN RTKLLDVYRM TDIRSSGKLL DGFVQVPSLS QEEPLEPLAL CAPTSEELVI LKGIDKGDIV SSGAPQISKE GSIGRNSEFL PSRRTKPGSR
0401: EDLPLAVDDS KDESNDNSKG GYSSYSDGSP YEKQMHYYGS NSKMEAMVDH QMYPDNKFHA EALREDGTPY RKSDEVPINR DLSMHGNSSI HPGNTWRAPS
0501: LGERSHTVTH DRRDIPTDVR SVPSDMGWAQ PKKEMNSEWT SGLANPPYSK DELKWQISED PIIKRQASLV LDREPEARKL SQPSPEDMVL YYKDPQGEIQ
0601: GPFSGSDIIG WFEAGYFGID LQVRLASAPN DSPFFVLGDV MPHLRAKARP PPGFGVPKQN EITDASSRPN YSSFGNLHAG SSEIDVIKNE PRHKHGSATE
0701: AENRFLESLM SGNMGSPPVE KFAFSEGLQG YIGNNAGGAP PMGVESGNNL YLLAKRMNLE RQRSLPNPYP YWPGRDATSM APKSEMVPDS AAPHPKLLSS
0801: MTDNSRQSSN SNADLMSILQ GISDRSSSGV SNGVTGWSNF PVQGGLDPLQ DKMDLQHGQN FPPQAAFGIQ QQRLQPQNQP SLTNLLAQAM DNPSGILAPE
0901: KLLSSSLPQD PQLLSMLQQQ YLMQLHSQAT VPAQQLLLLD KLLLLKKQEE QQQLLRQQQQ LLSQVLSEHH SNQIFGQAAA MAVGNASVDH SRLQPPQELF
1001: QMPVPAMQDE RATNLASGPP PISQDANYNV SSEGSFLHLP HQMFGNTTHQ KSYGTMLPEQ IDEIQQKEPL PASAVIDSSA LLLSTNLSTE EPSALQNSTL
1101: TSDGQAAENL EKNLQDTLII NEPVTVANSV GGANSVPLKS SGKSIDRSSE GISENKMFND MEVQLDVTPE ELQIEKERCN DEPSLETESK SVEVREVRKA
1201: SEKRTRKQKS SKSQSSSDQA KGVSKTVSLQ QPKQYETEGT IVGNTKPETH ISPGETTSGT SPQKTADKKF GIVSTETVDS QQVNGPSPLG IPRDDSKTAE
1301: GKSEPQLVGS VPVQNAQVHS GQRAWKHAPG FKAKSLLEIQ EEEQRKAKAE MVVSEIPLSV NAVNLPTPWA GVISNSDSKT SREIHQEAAS TELNLGKSES
1401: FHNTKAKKSQ LHDLLAEEVL AKSSERDMKI LDIVSSLPSL PVVSTSLDAI DDDNFIEAKD TKKSRKKSAK AKGVGAKVSA PSASVDISVG SSPVEKGKIS
1501: RLVQQEKEVL PAPPSGPSLG DFVPWKGEHV NPSPAPAWSS DSGKLPKPTS LRDIQKEQGK KASLVQNHVQ IPTPQKSQPT QVTRGSGPSW SISASSPAKA
1601: SPIQIKGEDD LFWGPIDQSK PDSKQVDFPH LASQGSWGTK NTPVKGSPGG SLSRQKSMGG RATEHSLSSS PASAQSSLKG KRDAMSKHSE AMDFRNWCES
1701: ESVRLTGTKD TSFLEFCLKQ SRSEAEILLT ENLNDPNHEF IDKFLNYKEL LSADVLEIAF QSRNDSKATG FSAGDMNSDN LGFGDFERDY SAGADGSMKG
1801: GGKKRGKKGK KVSPAVLGFN VVSNRIMMGE IQSVED
0001: MANSSAGSAA DHRNKHLSVN PPHQIFKDIQ GSDNAIPLSP QWLLSKPGEN KTGMGTGDPN QYGNHSDVVR TTGNGEETLD NLKKKDVFRP SLLDAESGRR
0101: DRWRDEERDT LSSVRNDRWR NGDKDSGDNK KVDRWDNVAP KFGEQRRGPN DRWTDSGNKD AAPEQRRESK WNSRWGPDDK EAEIPRNKWD EPGKDGEIIR
0201: EKGPSLPTSD GDHYRPWRPS QGRGRGEALH NQSTPNKQVT SFSHSRGRGE NTAIFSAGRG RMSPGGSIFT SAPNQSHPPG SASDKGESGP GEPPHLRYSR
0301: MKLLDVYRMA DTECYEKFPD GFIEVPSLTS EEPTDPLALC APSSDEVNVL DAIEKGKIVS SGAPQTSKDG PTGRNPVEFS QPRRIRPAGS REDMTFGAEE
0401: SKDESGETRN YPDDKFRPEA SHEGYAPFRR GNEAPVRELK EPSMQGNAHV QSASPWRQSS GGERSNRNSH DWNDPSADSR LKSSDSVWSH PKDSINHLGG
0501: NNMMLPQSKG ESRWQISEDP SLRRQPSLVF DREQEVRKLL PSSPEELSLY YKDPQGLIQG PFSGSDIIGW FEAGYFGIDL LVRLASAPND SPFSLLGDVM
0601: PHLRAKSGPP PGFTGAKQNE FVDAAGTSAF PGVGKVHSGM GETDMLQNDM RYKHVAGTVA ENRFIESLMS GGLTNSAQGV QGYGVNSSGG LSLPVTDGGA
0701: DMYLLAKKLE LERQRSIPSP YSYWPGRESA NLMPGSENVS ENAQQPTRSP SSDLLSILQG VTDRSSPAVS GPLPAWSQPI QKESDLHHAK TFQTQIPFGV
0801: QQQRLPEQNL PLSGLLGQPM ENNPGGMLSP DMMLAAGLSQ EHQSLNLLQQ QQLLLQLNAQ TPLSAQHQRL LVEKMLLLKH QHKQEEQQQL LRQQQQLYSQ
0901: VFADQQRSQQ RFGDPSYGQL QASLDALRLQ PSKDMSQVNQ QVQVPVSHEE RGINLADLLP VTHATNQTVA SFETPSLHLQ NQLFGNVDPR MVLPDQIDDT
1001: HKKESKSEYE RTVSADYVNS LYSEKPVLSP GYHATHNVEE PVSYPNNESS TATMTAPEIV ESKLLEEQSK DMYAGKGEVS IELSGETPAT EVKNNDVSVA
1101: RKTSEKKSRK QRAKQAADLA KSTSRAPLQE TKKPQPGSAD DSEIKGKTKK SADTLIDNDT HLIKSSTATA SNTSQMSSEV DSVRGEESSL QNTRTQPGRA
1201: WKPAPGFKPK SLLEIQMEEQ RVAQAEALAP KISSTVNSVG SAAPWAGIVT NSDSNILRET HGESAITQTG VVKPESVPTL KAKKSHLHDL LADDVFAKSS
1301: DKEREVMEII SNNDAFMQVT TTNAESFDDD NFIDARETKK SRKKSARAKT SGAKIAAHVP AVDTSLQTNS VEKGKSSRIL QQQEKEVLPA IPSGPSLGDF
1401: VLWKGESVNN PPPAAAWSSG PKKSTKPSSL RDIVKEQEKM TTSSHPPPSP VPTTQKAIPP QAHQGGASWS RSASSPSQAV SQSSSQSKSK GDDDLFWGPV
1501: EQSTQDTKQG DFPHLTSQNS WGTKNTPGKV NAGTSLNRQK SVSMGSADRV LSSPVVTQAS HKGKKEAVTK LTEANGFRDW CKSECLRLLG SEDTSVLEFC
1601: LKLSRSEAET LLIENLGSRD PDHKFIDKFL NYKDLLPSEV VEIAFQSKGS GVGTRNNTGE DYYYNTTAAN DGFSKVGGKK KAKKGKKVSL SASVLGFNVV
1701: SNRIMMGEIQ TIED
0101: DRWRDEERDT LSSVRNDRWR NGDKDSGDNK KVDRWDNVAP KFGEQRRGPN DRWTDSGNKD AAPEQRRESK WNSRWGPDDK EAEIPRNKWD EPGKDGEIIR
0201: EKGPSLPTSD GDHYRPWRPS QGRGRGEALH NQSTPNKQVT SFSHSRGRGE NTAIFSAGRG RMSPGGSIFT SAPNQSHPPG SASDKGESGP GEPPHLRYSR
0301: MKLLDVYRMA DTECYEKFPD GFIEVPSLTS EEPTDPLALC APSSDEVNVL DAIEKGKIVS SGAPQTSKDG PTGRNPVEFS QPRRIRPAGS REDMTFGAEE
0401: SKDESGETRN YPDDKFRPEA SHEGYAPFRR GNEAPVRELK EPSMQGNAHV QSASPWRQSS GGERSNRNSH DWNDPSADSR LKSSDSVWSH PKDSINHLGG
0501: NNMMLPQSKG ESRWQISEDP SLRRQPSLVF DREQEVRKLL PSSPEELSLY YKDPQGLIQG PFSGSDIIGW FEAGYFGIDL LVRLASAPND SPFSLLGDVM
0601: PHLRAKSGPP PGFTGAKQNE FVDAAGTSAF PGVGKVHSGM GETDMLQNDM RYKHVAGTVA ENRFIESLMS GGLTNSAQGV QGYGVNSSGG LSLPVTDGGA
0701: DMYLLAKKLE LERQRSIPSP YSYWPGRESA NLMPGSENVS ENAQQPTRSP SSDLLSILQG VTDRSSPAVS GPLPAWSQPI QKESDLHHAK TFQTQIPFGV
0801: QQQRLPEQNL PLSGLLGQPM ENNPGGMLSP DMMLAAGLSQ EHQSLNLLQQ QQLLLQLNAQ TPLSAQHQRL LVEKMLLLKH QHKQEEQQQL LRQQQQLYSQ
0901: VFADQQRSQQ RFGDPSYGQL QASLDALRLQ PSKDMSQVNQ QVQVPVSHEE RGINLADLLP VTHATNQTVA SFETPSLHLQ NQLFGNVDPR MVLPDQIDDT
1001: HKKESKSEYE RTVSADYVNS LYSEKPVLSP GYHATHNVEE PVSYPNNESS TATMTAPEIV ESKLLEEQSK DMYAGKGEVS IELSGETPAT EVKNNDVSVA
1101: RKTSEKKSRK QRAKQAADLA KSTSRAPLQE TKKPQPGSAD DSEIKGKTKK SADTLIDNDT HLIKSSTATA SNTSQMSSEV DSVRGEESSL QNTRTQPGRA
1201: WKPAPGFKPK SLLEIQMEEQ RVAQAEALAP KISSTVNSVG SAAPWAGIVT NSDSNILRET HGESAITQTG VVKPESVPTL KAKKSHLHDL LADDVFAKSS
1301: DKEREVMEII SNNDAFMQVT TTNAESFDDD NFIDARETKK SRKKSARAKT SGAKIAAHVP AVDTSLQTNS VEKGKSSRIL QQQEKEVLPA IPSGPSLGDF
1401: VLWKGESVNN PPPAAAWSSG PKKSTKPSSL RDIVKEQEKM TTSSHPPPSP VPTTQKAIPP QAHQGGASWS RSASSPSQAV SQSSSQSKSK GDDDLFWGPV
1501: EQSTQDTKQG DFPHLTSQNS WGTKNTPGKV NAGTSLNRQK SVSMGSADRV LSSPVVTQAS HKGKKEAVTK LTEANGFRDW CKSECLRLLG SEDTSVLEFC
1601: LKLSRSEAET LLIENLGSRD PDHKFIDKFL NYKDLLPSEV VEIAFQSKGS GVGTRNNTGE DYYYNTTAAN DGFSKVGGKK KAKKGKKVSL SASVLGFNVV
1701: SNRIMMGEIQ TIED
Arabidopsis Description
GYF domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q9FMM3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.