Factsheet for VIT_00s0199g00250.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_00s0199g00250.t01
VIT_01s0011g06360.t01
VIT_01s0026g02460.t01
VIT_12s0035g01880.t01
VIT_14s0108g00750.t01
VIT_17s0000g00810.t01
VIT_18s0001g12350.t01
VIT_18s0001g12580.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G65410.1	VIT_12s0035g01880.t01	AT1G14440.1	16428600
AT5G65410.1	VIT_01s0011g06360.t01	AT1G14687.1	16428600
AT5G65410.1	VIT_18s0001g12580.t01	AT1G75240.1	16428600
AT5G65410.1	VIT_18s0001g12580.t01	AT2G18350.1	16428600
AT5G65410.1	VIT_14s0108g00750.t01	AT3G28920.1	16428600
AT5G65410.1	VIT_18s0001g12580.t01	AT3G50890.1	16428600
AT5G65410.1	VIT_01s0026g02460.t01	AT5G15210.1	16428600
AT5G65410.1	VIT_14s0108g00750.t01	AT5G39760.1	16428600
AT5G65410.1	VIT_14s0108g00750.t01	AT5G39760.1	21798944
AT5G65410.1	VIT_17s0000g00810.t01	AT5G42780.1	16428600
AT5G65410.1	VIT_18s0001g12350.t01	AT5G42950.1	16120600
AT5G65410.1	VIT_00s0199g00250.t01	AT5G65410.1	16428600

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_18s0001g07140.t01	Wine grape	nucleus	69.26	73.48
Solyc04g074990.2.1	Tomato	nucleus	39.75	67.83
VIT_17s0000g06200.t01	Wine grape	cytosol	13.11	65.31
KRH74513	Soybean	nucleus	66.8	64.17
Solyc05g051420.1.1	Tomato	nucleus	43.03	62.87
GSMUA_Achr7P19060_001	Banana	nucleus	52.87	62.62
PGSC0003DMT400084919	Potato	nucleus	43.44	60.57
GSMUA_Achr5P05500_001	Banana	nucleus	58.2	59.66
PGSC0003DMT400096005	Potato	cytosol, mitochondrion, nucleus	35.66	59.18
GSMUA_Achr3P20390_001	Banana	nucleus	50.0	58.94
GSMUA_Achr10P...	Banana	nucleus	54.92	58.52
PGSC0003DMT400033624	Potato	nucleus	56.97	57.92
PGSC0003DMT400060623	Potato	nucleus	55.74	55.97
Solyc04g014260.1.1	Tomato	nucleus	56.15	55.47
KRH69650	Soybean	nucleus	66.8	55.25
GSMUA_Achr6P02170_001	Banana	nucleus	52.05	54.98
Zm00001d020774_P001	Maize	nucleus	59.84	53.48
Os09t0466400-01	Rice	nucleus	61.07	53.41
GSMUA_AchrUn_...	Banana	nucleus	54.51	53.2
TraesCS5B01G243800.1	Wheat	nucleus	60.25	49.49
VIT_14s0108g00760.t01	Wine grape	mitochondrion	19.26	49.47
TraesCS5D01G253100.1	Wheat	nucleus	59.84	49.32
Os08t0479400-01	Rice	nucleus	58.61	49.31
EER96888	Sorghum	nucleus	60.25	48.68
Zm00001d005931_P001	Maize	nucleus	56.97	48.6
HORVU5Hr1G069730.1	Barley	nucleus	59.84	48.34
TraesCS5A01G246500.1	Wheat	nucleus	58.2	47.81
EES15144	Sorghum	nucleus	59.43	46.62
Zm00001d031840_P001	Maize	nucleus	58.61	46.43
VIT_01s0026g02450.t01	Wine grape	cytosol	15.98	45.88
CDY54719	Canola	nucleus	43.44	43.98
Bra037816.1-P	Field mustard	nucleus	43.03	43.39
CDX81284	Canola	nucleus	45.08	43.14
CDY33960	Canola	nucleus	45.49	41.26
AT5G65410.1	Thale cress	nucleus	46.72	40.86
CDY37827	Canola	nucleus	45.49	40.81
Bra031859.1-P	Field mustard	nucleus	45.49	40.81
VIT_12s0035g01880.t01	Wine grape	nucleus	46.72	40.57
VIT_17s0000g00810.t01	Wine grape	nucleus	25.41	40.0
CDY14559	Canola	nucleus	45.9	38.23
Bra024382.1-P	Field mustard	nucleus	45.9	38.23
VIT_18s0117g00270.t01	Wine grape	nucleus	41.8	37.5
VIT_07s0130g00240.t01	Wine grape	nucleus	30.33	37.37
VIT_14s0108g00810.t01	Wine grape	cytosol	18.85	35.66
VIT_08s0056g01130.t01	Wine grape	nucleus	19.26	34.81
VIT_18s0001g12580.t01	Wine grape	nucleus	41.8	32.28
VIT_01s0026g02460.t01	Wine grape	nucleus	30.33	32.17
VIT_10s0042g00210.t01	Wine grape	nucleus	24.59	29.85
VIT_14s0108g00750.t01	Wine grape	nucleus	39.75	27.32
VIT_04s0023g01880.t01	Wine grape	nucleus	40.98	23.09

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100853773	wikigene:100853773	MapMan:15.5.3.13	ProteinID:CCB45249	ProteinID:CCB45249.1
UniProt:F6GZ63	EMBL:FN594987	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
InterPro:Homeobox-like_sf	InterPro:Homeodomain_ZF_HD	InterPro:IPR006456	EntrezGene:LOC100853773	wikigene:LOC100853773	PFAM:PD125774
PFAM:PF04770	PFscan:PS51523	PANTHER:PTHR31948	PANTHER:PTHR31948:SF44	SUPFAM:SSF46689	TIGR:TC64268
TIGRFAMs:TIGR01565	TIGRFAMs:TIGR01566	UniParc:UPI000210838F	ArrayExpress:VIT_00s0199g00250	EnsemblPlantsGene:VIT_00s0199g00250	EnsemblPlants:VIT_00s0199g00250.t01
RefSeq:XP_003635057	RefSeq:XP_003635057.1	InterPro:ZF_HD_homeobox_Cys/His_dimer	SEG:seg	:	:

Description

No Description!

Coordinates

chrUn:-:11277586..11280697

Molecular Weight (calculated)

26967.4 Da

IEP (calculated)

7.537

GRAVY (calculated)

-0.869

Length

244 amino acids

Sequence
(BLAST)

001: MEFEDQEEHE EEIGLPTSYD SFGNSTRVKM ATSGGEGSPA PRKPRYRECL KNHAVSIGGH AVDGCGEFMA AGAEGTLDAL KCAACNCHRN FHRKEMEGGG
101: EGFHHHHHPH QPQFSPYYRT PAGYLHVAAH HRPLALPSTS GGGGTHSRDD QEDVSNPSGA GSSKKRFRTK FTQEQKDKMF GLAERLGWRI QKHDEAVVQQ
201: FCSETGVKRH VLKVWMHNNK HTLGLPTRHT LQDALLVPGE PSSS

Best Arabidopsis Sequence Match ( AT4G24660.1 )
(BLAST)

001: MNFEDQEEDM EMSGVNPPCG YDSLSGEGAT SSGGGGVGRS KGVGAKIRYR ECLKNHAVNI GGHAVDGCCE FMPSGEDGTL DALKCAACGC HRNFHRKETE
101: SIGGRAHRVP TYYNRPPQPH QPPGYLHLTS PAAPYRPPAA SGDEEDTSNP SSSGGTTKRF RTKFTAEQKE KMLAFAERLG WRIQKHDDVA VEQFCAETGV
201: RRQVLKIWMH NNKNSLGKKP

Arabidopsis Description

ATHB22homeobox protein 22 [Source:TAIR;Acc:AT4G24660]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.