Factsheet for VIT_18s0117g00270.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_17s0000g06200.t01	Wine grape	cytosol	10.66	59.18
VIT_01s0026g02450.t01	Wine grape	cytosol	13.97	44.71
VIT_14s0108g00760.t01	Wine grape	mitochondrion	15.07	43.16
VIT_00s0199g00250.t01	Wine grape	nucleus	37.5	41.8
VIT_17s0000g00810.t01	Wine grape	nucleus	23.53	41.29
VIT_18s0001g07140.t01	Wine grape	nucleus	33.46	39.57
VIT_12s0035g01880.t01	Wine grape	nucleus	34.19	33.1
VIT_07s0130g00240.t01	Wine grape	nucleus	23.9	32.83
VIT_14s0108g00810.t01	Wine grape	cytosol	14.71	31.01
VIT_18s0001g12580.t01	Wine grape	nucleus	33.46	28.8
VIT_01s0026g02460.t01	Wine grape	nucleus	22.06	26.09
VIT_08s0056g01130.t01	Wine grape	nucleus	12.5	25.19
VIT_14s0108g00750.t01	Wine grape	nucleus	31.25	23.94
VIT_10s0042g00210.t01	Wine grape	nucleus	16.91	22.89
VIT_04s0023g01880.t01	Wine grape	nucleus	31.62	19.86

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100251158	wikigene:100251158	MapMan:15.5.3.13	EMBL:AM433676	ProteinID:CAN64849
ProteinID:CAN64849.1	ProteinID:CCB45115	ProteinID:CCB45115.1	UniProt:F6GYS9	EMBL:FN594973	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:Homeodomain_ZF_HD	InterPro:IPR006456
EntrezGene:LOC100251158	wikigene:LOC100251158	PFAM:PD125774	PFAM:PF04770	PFscan:PS51523	PANTHER:PTHR31948
PANTHER:PTHR31948:SF18	SUPFAM:SSF46689	TIGR:TC62194	TIGRFAMs:TIGR01565	TIGRFAMs:TIGR01566	UniParc:UPI000210A03E
ArrayExpress:VIT_18s0117g00270	EnsemblPlantsGene:VIT_18s0117g00270	EnsemblPlants:VIT_18s0117g00270.t01	unigene:Vvi.15239	RefSeq:XP_002276580	RefSeq:XP_002276580.1
RefSeq:XP_010665240.1	RefSeq:XP_010665241.1	InterPro:ZF_HD_homeobox_Cys/His_dimer	SEG:seg	:	:

Description

No Description!

Coordinates

chr18:-:23508689..23509863

Molecular Weight (calculated)

30195.9 Da

IEP (calculated)

8.417

GRAVY (calculated)

-0.852

Length

272 amino acids

Sequence
(BLAST)

001: MELSVVPYGR SAKMEVDDVE EDEAAENKPM VMNPKATAVK PRYRECMRNH AASIGGHASD GCGEFMPSGG GGGGDAASLT CAACGCHRNF HRREVPGAAH
101: LHHHLMHPGP PHAHPMLLYN TTPSPKNASV HALPHKFLGV PAFGGLDHHH HHHQDDGERQ YDRRSETPER GDVQIATMMT TTKNKRFRTK FTQEQKERML
201: ELAERLGWRI QKQDDVVLSQ FCSELGIKRN VLKVWMHNNK NAHRRREPPP ESPPPPPPPP PPSMAPPQAA GV

Best Arabidopsis Sequence Match ( AT4G24660.2 )
(BLAST)

001: MNFEDQEEDM EMSGVNPPCG YDSLSGEGAT SSGGGGVGRS KGVGAKIRYR ECLKNHAVNI GGHAVDGCCE FMPSGEDGTL DALKCAACGC HRNFHRKETE
101: SIGGRAHRVP TYYNRPPQPH QPPGYLHLTS PAAPYRPPAA SGDEEDTSNP SSSGGTTKRF RTKFTAEQKE KMLAFAERLG WRIQKHDDVA VEQFCAETGV
201: RRQVLKIWMH NNKNSLDGYQ VFKRYEATSA H

Arabidopsis Description

ATHB22homeobox protein 22 [Source:TAIR;Acc:AT4G24660]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.