Factsheet for VIT_17s0000g00810.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_00s0199g00250.t01
VIT_14s0108g00750.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G42780.1	VIT_14s0108g00750.t01	AT5G39760.1	16428600
AT5G42780.1	VIT_00s0199g00250.t01	AT5G65410.1	16428600

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH41884	Soybean	nucleus	66.45	67.76
KRH60587	Soybean	nucleus	63.23	64.47
Solyc03g098060.1.1	Tomato	nucleus	66.45	57.54
PGSC0003DMT400083993	Potato	nucleus	66.45	57.54
KRH48720	Soybean	nucleus	63.87	45.41
KRH38989	Soybean	nucleus, plastid	64.52	43.67
VIT_17s0000g06200.t01	Wine grape	cytosol	12.9	40.82
VIT_01s0026g02450.t01	Wine grape	cytosol	18.06	32.94
Zm00001d033791_P001	Maize	cytosol, mitochondrion, nucleus	46.45	31.17
TraesCS4A01G264100.1	Wheat	cytosol, mitochondrion, nucleus	47.1	30.93
TraesCS4B01G050800.1	Wheat	cytosol, mitochondrion, nucleus	47.1	30.93
TraesCSU01G070700.1	Wheat	cytosol, mitochondrion, nucleus	47.1	30.93
HORVU4Hr1G008360.1	Barley	cytosol, mitochondrion, nucleus	47.74	30.83
Os03t0718500-00	Rice	mitochondrion, nucleus, peroxisome	47.1	30.67
EER93559	Sorghum	cytosol, mitochondrion, nucleus	45.16	29.91
VIT_14s0108g00760.t01	Wine grape	mitochondrion	18.06	29.47
Zm00001d013409_P001	Maize	cytosol, mitochondrion, nucleus	45.16	29.17
VIT_18s0001g07140.t01	Wine grape	nucleus	41.29	27.83
AT5G42780.1	Thale cress	nucleus	40.0	25.62
VIT_00s0199g00250.t01	Wine grape	nucleus	40.0	25.41
VIT_12s0035g01880.t01	Wine grape	nucleus	43.87	24.2
VIT_18s0117g00270.t01	Wine grape	nucleus	41.29	23.53
VIT_14s0108g00810.t01	Wine grape	cytosol	18.71	22.48
VIT_18s0001g12580.t01	Wine grape	nucleus	45.16	22.15
VIT_01s0026g02460.t01	Wine grape	nucleus	32.26	21.74
VIT_08s0056g01130.t01	Wine grape	nucleus	18.71	21.48
VIT_07s0130g00240.t01	Wine grape	nucleus	27.1	21.21
Bra027455.1-P	Field mustard	nucleus	38.06	20.56
VIT_14s0108g00750.t01	Wine grape	nucleus	44.52	19.44
VIT_10s0042g00210.t01	Wine grape	nucleus	24.52	18.91
VIT_04s0023g01880.t01	Wine grape	nucleus	44.52	15.94

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100243782	wikigene:100243782	MapMan:15.5.3.13	UniProt:A5C2A7	EMBL:AM479560
ProteinID:CAN77493	ProteinID:CAN77493.1	ProteinID:CCB60925	ProteinID:CCB60925.1	EMBL:FN596517	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	InterPro:Homeobox-like_sf	InterPro:Homeodomain_ZF_HD	InterPro:IPR006456	EntrezGene:LOC100243782	wikigene:LOC100243782
PFAM:PD125774	PFAM:PF04770	PFscan:PS51523	PANTHER:PTHR31948	PANTHER:PTHR31948:SF16	SUPFAM:SSF46689
TIGRFAMs:TIGR01565	TIGRFAMs:TIGR01566	UniParc:UPI00015221FA	ArrayExpress:VIT_17s0000g00810	EnsemblPlantsGene:VIT_17s0000g00810	EnsemblPlants:VIT_17s0000g00810.t01
RefSeq:XP_002263466	RefSeq:XP_002263466.1	InterPro:ZF_HD_homeobox_Cys/His_dimer	SEG:seg	:	:

Description

No Description!

Coordinates

chr17_random:+:525725..526345

Molecular Weight (calculated)

17392.4 Da

IEP (calculated)

8.616

GRAVY (calculated)

-0.797

Length

155 amino acids

Sequence
(BLAST)

001: MEGELYRECL RNHAASLGSY ATDGCGEFTL DATSPGGLLC AACGCHRNFH RKLISSTPFA EGRQQQSAAA VESPESERSE GHKKRLRTKF TADQKEKMLA
101: FAEKIRWKMQ RKEEEDEIER FCRGVGVSRQ VFKVWMHNHK NSSSSSSSAS TTLTQ

Best Arabidopsis Sequence Match ( AT4G24660.1 )
(BLAST)

001: MNFEDQEEDM EMSGVNPPCG YDSLSGEGAT SSGGGGVGRS KGVGAKIRYR ECLKNHAVNI GGHAVDGCCE FMPSGEDGTL DALKCAACGC HRNFHRKETE
101: SIGGRAHRVP TYYNRPPQPH QPPGYLHLTS PAAPYRPPAA SGDEEDTSNP SSSGGTTKRF RTKFTAEQKE KMLAFAERLG WRIQKHDDVA VEQFCAETGV
201: RRQVLKIWMH NNKNSLGKKP

Arabidopsis Description

ATHB22homeobox protein 22 [Source:TAIR;Acc:AT4G24660]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.