Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc02g067310.2.1 | |
| Solyc02g067320.1.1 | |
| Solyc04g014260.1.1 | |
| Solyc05g051420.1.1 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400083993 | Potato | nucleus | 97.77 | 97.77 |
| KRH41884 | Soybean | nucleus | 57.54 | 67.76 |
| VIT_17s0000g00810.t01 | Wine grape | nucleus | 57.54 | 66.45 |
| KRH60587 | Soybean | nucleus | 55.87 | 65.79 |
| KRH48720 | Soybean | nucleus | 56.98 | 46.79 |
| KRH38989 | Soybean | nucleus, plastid | 56.42 | 44.1 |
| Solyc05g051420.1.1 | Tomato | nucleus | 37.99 | 40.72 |
| Solyc03g116070.1.1 | Tomato | mitochondrion | 17.32 | 37.35 |
| Solyc02g087970.1.1 | Tomato | mitochondrion | 18.44 | 36.67 |
| Solyc04g074990.2.1 | Tomato | nucleus | 29.05 | 36.36 |
| Solyc03g061620.1.1 | Tomato | cytosol | 17.32 | 35.23 |
| Os03t0718500-00 | Rice | mitochondrion, nucleus, peroxisome | 41.34 | 31.09 |
| TraesCSU01G070700.1 | Wheat | cytosol, mitochondrion, nucleus | 40.78 | 30.93 |
| TraesCS4B01G050800.1 | Wheat | cytosol, mitochondrion, nucleus | 40.78 | 30.93 |
| TraesCS4A01G264100.1 | Wheat | cytosol, mitochondrion, nucleus | 40.78 | 30.93 |
| Zm00001d033791_P001 | Maize | cytosol, mitochondrion, nucleus | 39.66 | 30.74 |
| HORVU4Hr1G008360.1 | Barley | cytosol, mitochondrion, nucleus | 40.78 | 30.42 |
| EER93559 | Sorghum | cytosol, mitochondrion, nucleus | 39.66 | 30.34 |
| Zm00001d013409_P001 | Maize | cytosol, mitochondrion, nucleus | 39.11 | 29.17 |
| Solyc04g014260.1.1 | Tomato | nucleus | 38.55 | 27.94 |
| AT5G42780.1 | Thale cress | nucleus | 36.31 | 26.86 |
| Solyc02g067330.1.1 | Tomato | cytosol, nucleus, plastid | 15.08 | 26.47 |
| Solyc02g067310.2.1 | Tomato | nucleus | 42.46 | 26.03 |
| Solyc05g007580.1.1 | Tomato | nucleus | 43.02 | 25.93 |
| Solyc02g085160.1.1 | Tomato | nucleus | 41.34 | 25.26 |
| Solyc05g018740.1.1 | Tomato | cytosol | 16.76 | 25.21 |
| Solyc04g080490.2.1 | Tomato | nucleus | 40.78 | 25.17 |
| Solyc01g103820.1.1 | Tomato | cytosol | 12.85 | 24.47 |
| Solyc01g103810.1.1 | Tomato | cytosol | 15.64 | 24.14 |
| Solyc05g020000.1.1 | Tomato | cytosol | 15.64 | 23.53 |
| Solyc01g102980.2.1 | Tomato | nucleus | 37.99 | 23.45 |
| Solyc02g067320.1.1 | Tomato | nucleus | 41.9 | 22.66 |
| Bra027455.1-P | Field mustard | nucleus | 36.31 | 22.65 |
| Solyc09g089550.2.1 | Tomato | nucleus | 21.79 | 4.84 |
Protein Annotations
| EnsemblPlants:Solyc03g098060.1.1 | EnsemblPlantsGene:Solyc03g098060.1 | Gene3D:1.10.10.60 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:Homeodomain_ZF_HD | InterPro:IPR006456 | InterPro:ZF_HD_homeobox_Cys/His_dimer | PANTHER:PTHR31948 |
| PANTHER:PTHR31948:SF16 | PFAM:PD125774 | PFAM:PF04770 | PFscan:PS51523 | SEG:seg | SUPFAM:SSF46689 |
| TIGRFAMs:TIGR01565 | TIGRFAMs:TIGR01566 | UniParc:UPI000276876A | UniProt:K4BJM1 | MapMan:15.5.3.13 | : |
Description
No Description!
Coordinates
chr3:-:60406311..60406850
Molecular Weight (calculated)
19952.9 Da
IEP (calculated)
8.290
GRAVY (calculated)
-0.936
Length
179 amino acids
Sequence
(BLAST)
(BLAST)
001: MQGDKSNDIY RECLRNHAAS LGSYATDGCG EFTLDDTNTS PGGSTSLNCA ACGCHRNFHR KFSCGGSYSN NSSRDDREII AAHDYRLATT EESPAVSERS
101: GKKRFRTKFT GDQKEKMLAF AEKLGWTLQR KDEENETERF CREIGVSRKV FKVWMHNHKN NSSSVSSTVT GNNASSLTQ
101: GKKRFRTKFT GDQKEKMLAF AEKLGWTLQR KDEENETERF CREIGVSRKV FKVWMHNHKN NSSSVSSTVT GNNASSLTQ
001: MNFEDQEEDM EMSGVNPPCG YDSLSGEGAT SSGGGGVGRS KGVGAKIRYR ECLKNHAVNI GGHAVDGCCE FMPSGEDGTL DALKCAACGC HRNFHRKETE
101: SIGGRAHRVP TYYNRPPQPH QPPGYLHLTS PAAPYRPPAA SGDEEDTSNP SSSGGTTKRF RTKFTAEQKE KMLAFAERLG WRIQKHDDVA VEQFCAETGV
201: RRQVLKIWMH NNKNSLGKKP
101: SIGGRAHRVP TYYNRPPQPH QPPGYLHLTS PAAPYRPPAA SGDEEDTSNP SSSGGTTKRF RTKFTAEQKE KMLAFAERLG WRIQKHDDVA VEQFCAETGV
201: RRQVLKIWMH NNKNSLGKKP
Arabidopsis Description
ATHB22homeobox protein 22 [Source:TAIR;Acc:AT4G24660]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.