Factsheet for PGSC0003DMT400083993

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	plastid
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400017840
PGSC0003DMT400034368
PGSC0003DMT400035635
PGSC0003DMT400060623
PGSC0003DMT400084919
PGSC0003DMT400096005

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G42780.1	PGSC0003DMT400017840	AT5G39760.1	16428600
AT5G42780.1	PGSC0003DMT400034368	AT5G39760.1	16428600
AT5G42780.1	PGSC0003DMT400035635	AT5G39760.1	16428600
AT5G42780.1	PGSC0003DMT400060623	AT5G65410.1	16428600
AT5G42780.1	PGSC0003DMT400084919	AT5G65410.1	16428600
AT5G42780.1	PGSC0003DMT400096005	AT5G65410.1	16428600

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g098060.1.1	Tomato	nucleus	97.77	97.77
KRH41884	Soybean	nucleus	57.54	67.76
VIT_17s0000g00810.t01	Wine grape	nucleus	57.54	66.45
KRH60587	Soybean	nucleus	55.87	65.79
KRH48720	Soybean	nucleus	57.54	47.25
KRH38989	Soybean	nucleus, plastid	56.98	44.54
PGSC0003DMT400084919	Potato	nucleus	37.43	38.29
PGSC0003DMT400050286	Potato	mitochondrion	17.32	37.35
PGSC0003DMT400096005	Potato	cytosol, mitochondrion, nucleus	29.61	36.05
Os03t0718500-00	Rice	mitochondrion, nucleus, peroxisome	41.34	31.09
TraesCSU01G070700.1	Wheat	cytosol, mitochondrion, nucleus	40.78	30.93
TraesCS4B01G050800.1	Wheat	cytosol, mitochondrion, nucleus	40.78	30.93
TraesCS4A01G264100.1	Wheat	cytosol, mitochondrion, nucleus	40.78	30.93
PGSC0003DMT400033624	Potato	nucleus	41.34	30.83
Zm00001d033791_P001	Maize	cytosol, mitochondrion, nucleus	39.66	30.74
HORVU4Hr1G008360.1	Barley	cytosol, mitochondrion, nucleus	40.78	30.42
EER93559	Sorghum	cytosol, mitochondrion, nucleus	39.66	30.34
Zm00001d013409_P001	Maize	cytosol, mitochondrion, nucleus	39.11	29.17
PGSC0003DMT400060623	Potato	nucleus	39.11	28.81
AT5G42780.1	Thale cress	nucleus	36.31	26.86
PGSC0003DMT400080288	Potato	nucleus	42.46	26.48
PGSC0003DMT400009581	Potato	nucleus	40.78	25.7
PGSC0003DMT400009033	Potato	nucleus	41.9	24.83
PGSC0003DMT400090846	Potato	cytosol	16.76	24.79
PGSC0003DMT400035635	Potato	nucleus	40.78	23.78
PGSC0003DMT400053397	Potato	nucleus	37.99	23.69
PGSC0003DMT400086860	Potato	cytosol	15.64	23.53
PGSC0003DMT400034368	Potato	nucleus	44.69	23.12
PGSC0003DMT400017840	Potato	nucleus	42.46	23.1
Bra027455.1-P	Field mustard	nucleus	35.75	22.3
PGSC0003DMT400044269	Potato	nucleus	22.35	9.55
PGSC0003DMT400044270	Potato	cytosol	22.91	5.06

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:102602352	MapMan:15.5.3.13	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:Homeodomain_ZF_HD	InterPro:IPR006456	UniProt:M1D7H0	PFAM:PD125774
PFAM:PF04770	EnsemblPlantsGene:PGSC0003DMG400033694	PGSC:PGSC0003DMG400033694	EnsemblPlants:PGSC0003DMT400083993	PFscan:PS51523	PANTHER:PTHR31948
PANTHER:PTHR31948:SF16	SUPFAM:SSF46689	TIGRFAMs:TIGR01565	TIGRFAMs:TIGR01566	UniParc:UPI000295751B	RefSeq:XP_006363993.1
InterPro:ZF_HD_homeobox_Cys/His_dimer	SEG:seg	:	:	:	:

Description

Zinc finger homeodomain protein SZF-HD1 [Source:PGSC_GENE;Acc:PGSC0003DMG400033694]

Coordinates

chr3:+:45225402..45226231

Molecular Weight (calculated)

19922.9 Da

IEP (calculated)

8.492

GRAVY (calculated)

-0.905

Length

179 amino acids

Sequence
(BLAST)

001: MQGAKSNDIY RECLRNHAAS LGSYATDGCG EFTLDDSNTS PGGSTSLNCA ACGCHRNFHR KFTCGGSYSN NSSRDDREII AAHDYRLATT EESPAVSERS
101: GKKRFRTKFT GDQKEKMLAF AEKLGWTLQR KDEENETERF CREIGVSRKV FKVWMHNHKN NSSSVSSTIT GNNASSLTQ

Best Arabidopsis Sequence Match ( AT4G24660.1 )
(BLAST)

001: MNFEDQEEDM EMSGVNPPCG YDSLSGEGAT SSGGGGVGRS KGVGAKIRYR ECLKNHAVNI GGHAVDGCCE FMPSGEDGTL DALKCAACGC HRNFHRKETE
101: SIGGRAHRVP TYYNRPPQPH QPPGYLHLTS PAAPYRPPAA SGDEEDTSNP SSSGGTTKRF RTKFTAEQKE KMLAFAERLG WRIQKHDDVA VEQFCAETGV
201: RRQVLKIWMH NNKNSLGKKP

Arabidopsis Description

ATHB22homeobox protein 22 [Source:TAIR;Acc:AT4G24660]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.