Factsheet for PGSC0003DMT400044269

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400044270	Potato	cytosol	100.0	51.73
Solyc09g089550.2.1	Tomato	nucleus	90.69	47.2
Os08t0438100-01	Rice	cytosol	9.79	44.09
GSMUA_AchrUn_...	Banana	cytosol	9.55	43.01
PGSC0003DMT400050286	Potato	mitochondrion	8.35	42.17
TraesCS5D01G234700.1	Wheat	mitochondrion	9.31	41.94
TraesCS5A01G227200.1	Wheat	mitochondrion	9.31	41.94
TraesCS5B01G226000.1	Wheat	mitochondrion	9.07	40.86
GSMUA_Achr6P30650_001	Banana	mitochondrion	8.83	38.95
Zm00001d032177_P001	Maize	mitochondrion	9.79	34.45
Zm00001d020459_P001	Maize	mitochondrion	9.07	34.23
PGSC0003DMT400096005	Potato	cytosol, mitochondrion, nucleus	11.93	34.01
CDY46298	Canola	cytosol	6.68	33.33
KXG35630	Sorghum	nucleus	8.59	32.73
PGSC0003DMT400084919	Potato	nucleus	13.6	32.57
KXG25227	Sorghum	mitochondrion	9.79	32.28
VIT_08s0056g01130.t01	Wine grape	nucleus	10.26	31.85
Zm00001d050452_P001	Maize	mitochondrion	9.55	31.5
PGSC0003DMT400086860	Potato	cytosol	8.35	29.41
PGSC0003DMT400090846	Potato	cytosol	8.11	28.1
PGSC0003DMT400060623	Potato	nucleus	15.75	27.16
PGSC0003DMT400033624	Potato	nucleus	15.51	27.08
Bra039615.1-P	Field mustard	cytosol	11.22	25.97
PGSC0003DMT400053397	Potato	nucleus	16.47	24.04
PGSC0003DMT400083993	Potato	nucleus	9.55	22.35
PGSC0003DMT400009581	Potato	nucleus	14.56	21.48
PGSC0003DMT400035635	Potato	nucleus	14.56	19.87
PGSC0003DMT400080288	Potato	nucleus	12.65	18.47
PGSC0003DMT400009033	Potato	nucleus	12.89	17.88
PGSC0003DMT400017840	Potato	nucleus	13.6	17.33
PGSC0003DMT400034368	Potato	nucleus	13.84	16.76

Protein Annotations

EnsemblPlants:PGSC0003DMT400044269	EnsemblPlantsGene:PGSC0003DMG402017193	InterPro:IPR006456	InterPro:ZF_HD_homeobox_Cys/His_dimer	PANTHER:PTHR31948	PFAM:PD125774
PFAM:PF04770	PFscan:PS51523	PGSC:PGSC0003DMG402017193	SEG:seg	TIGRFAMs:TIGR01566	UniParc:UPI000296B3D7
UniProt:M1BFX1	MapMan:15.5.3.13	:	:	:	:

Description

Mini zinc finger 1 [Source:PGSC_GENE;Acc:PGSC0003DMG402017193]

Coordinates

chr9:-:55783025..55784284

Molecular Weight (calculated)

46481.8 Da

IEP (calculated)

7.232

GRAVY (calculated)

-0.810

Length

419 amino acids

Sequence
(BLAST)

001: MQKQNIYPDF RLSDAKSVNW NTDPSKLHPS INGLSAPATD EKPMSLQVPA VSQCLSVPSI RPPLPLLAHS VSVAGRLCAD RLTTSGIYVP QSYPKGILGS
101: PIFGRNEQAG RGSTFPSPSQ ALDQSSLAQQ HNQLNSYKEP KMTVRIAQSQ PPSTTSVSDT TSSIRYRECL KNHAASMGGH ALDGCGEFMP SGEEGTPGAL
201: KCAACNCHQN FHRKEIDDYQ QMDDVGSHSR FSQPRNNSSS GSIQNQSPIS LPTQQLQQYH HDYSNSCSPR SLVDSLQPYT QPPSPTSGSV FSQQAWERIE
301: PSSIRPSYSY EMVNHNTMQN GKQREYSWSD SSSNTSRSRD HPSIRNENWN FDMFKPLNNR TPDHIPLEFP AYPSRCQPQT VFADEFPHLD IINNLLHEEH
401: GTGRTLMSNS GFQRLNNGS

Best Arabidopsis Sequence Match ( AT1G75240.1 )
(BLAST)

001: MDMRSHEMIE RRREDNGNNN GGVVISNIIS TNIDDNCNGN NNNTRVSCNS QTLDHHQSKS PSSFSISAAA KPTVRYRECL KNHAASVGGS VHDGCGEFMP
101: SGEEGTIEAL RCAACDCHRN FHRKEMDGVG SSDLISHHRH HHYHHNQYGG GGGRRPPPPN MMLNPLMLPP PPNYQPIHHH KYGMSPPGGG GMVTPMSVAY
201: GGGGGGAESS SEDLNLYGQS SGEGAGAAAG QMAFSMSSSK KRFRTKFTTD QKERMMDFAE KLGWRMNKQD EEELKRFCGE IGVKRQVFKV WMHNNKNNAK
301: KPPTPTTTL

Arabidopsis Description

ZHD5ZHD5 [Source:UniProtKB/TrEMBL;Acc:A0A178WFZ4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.