CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
mitochondrion 3
cytosol 1
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EES15050
KXG35632
OQU86730

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G74660.1	EES15050	AT5G15210.1	21245844
AT1G74660.1	KXG35632	AT5G15210.1	21245844
AT1G74660.1	OQU86730	AT5G15210.1	21245844

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d020459_P001	Maize	mitochondrion	84.55	83.78
TraesCS5D01G234700.1	Wheat	mitochondrion	66.36	78.49
TraesCS5A01G227200.1	Wheat	mitochondrion	66.36	78.49
TraesCS5B01G226000.1	Wheat	mitochondrion	65.45	77.42
GSMUA_Achr6P30650_001	Banana	mitochondrion	50.0	57.89
EES16563	Sorghum	cytosol	41.82	50.0
KRH56913	Soybean	cytosol	34.55	48.1
KRH03476	Soybean	cytosol	34.55	48.1
KRH18477	Soybean	cytosol, mitochondrion	35.45	47.56
EES07913	Sorghum	cytosol	40.91	45.92
KXG25227	Sorghum	mitochondrion	50.0	43.31
KRG93529	Soybean	cytosol, mitochondrion	38.18	43.3
AT1G18835.1	Thale cress	mitochondrion	34.55	43.18
GSMUA_AchrUn_...	Banana	cytosol	36.36	43.01
AT3G28917.1	Thale cress	mitochondrion	39.09	43.0
KRH54551	Soybean	cytosol, mitochondrion	34.55	42.7
KRH63346	Soybean	cytosol, mitochondrion	34.55	42.7
AT1G74660.1	Thale cress	mitochondrion	35.45	38.24
VIT_08s0056g01130.t01	Wine grape	nucleus	38.18	31.11
CDY46298	Canola	cytosol	14.55	19.05
Bra039615.1-P	Field mustard	cytosol	30.91	18.78
EER93559	Sorghum	cytosol, mitochondrion, nucleus	26.36	12.39
EER96888	Sorghum	nucleus	30.91	11.26
EES15144	Sorghum	nucleus	30.91	10.93
KXG23238	Sorghum	nucleus	30.91	10.37
KXG28111	Sorghum	nucleus	32.73	9.14
KXG35632	Sorghum	nucleus	30.0	8.66
PGSC0003DMT400044269	Potato	nucleus	32.73	8.59
OQU78488	Sorghum	plastid	28.18	8.31
EES15050	Sorghum	cytosol	28.18	7.95
KXG30914	Sorghum	nucleus	28.18	7.64
OQU86730	Sorghum	nucleus	15.45	6.42
Solyc09g089550.2.1	Tomato	nucleus	36.36	4.97
PGSC0003DMT400044270	Potato	cytosol	35.45	4.81

Protein Annotations

EnsemblPlants:KXG35630	EnsemblPlantsGene:SORBI_3002G201100	InterPro:IPR006456	InterPro:ZF_HD_homeobox_Cys/His_dimer	PANTHER:PTHR31948	PANTHER:PTHR31948:SF27
PFAM:PD125774	PFAM:PF04770	PFscan:PS51523	ProteinID:KXG35630	ProteinID:KXG35630.1	TIGRFAMs:TIGR01566
UniParc:UPI00081AE287	UniProt:A0A1B6QCK4	MapMan:15.5.3.13	:	:	:

Description

hypothetical protein

Coordinates

chr2:+:59112332..59115832

Molecular Weight (calculated)

12461.8 Da

IEP (calculated)

8.496

GRAVY (calculated)

-0.545

Length

110 amino acids

Sequence
(BLAST)

001: MQRGSSCAES KAWLERGRKL TMKRLLIMRR CEPIVRFTCC SVHYRECRRN HAASTGGYAI DGCREFIAEG EESTSGALKC AACGCHRSFH RRVQVYEVAW
101: DYGSDTSSTE

Best Arabidopsis Sequence Match ( AT3G28917.1 )
(BLAST)

1: MRKRQVVLRR ASPEEPSRSS STASSLTVRT VRYGECQKNH AAAVGGYAVD GCREFMASRG EEGTVAALTC AACGCHRSFH RREIETEVVC DCNSPPSTGN

Arabidopsis Description

MIF2Mini zinc finger protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LJW5]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.