CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
EER93559
EER95850
EER96888
EES15050
EES15144
KXG23238
KXG28111
KXG30914
KXG35632
OQU78488
OQU86730
OQU90902

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G65410.1	KXG23238	AT1G14440.1	16428600
AT5G65410.1	KXG28111	AT1G14440.1	16428600
AT5G65410.1	KXG30914	AT1G75240.1	16428600
AT5G65410.1	OQU78488	AT1G75240.1	16428600
AT5G65410.1	KXG30914	AT2G18350.1	16428600
AT5G65410.1	OQU78488	AT2G18350.1	16428600
AT5G65410.1	KXG30914	AT3G50890.1	16428600
AT5G65410.1	OQU78488	AT3G50890.1	16428600
AT5G65410.1	EES15050	AT5G15210.1	16428600
AT5G65410.1	KXG35632	AT5G15210.1	16428600
AT5G65410.1	OQU86730	AT5G15210.1	16428600
AT5G65410.1	EER93559	AT5G42780.1	16428600
AT5G65410.1	EER95850	AT5G42950.1	16120600
AT5G65410.1	OQU90902	AT5G42950.1	16120600
AT5G65410.1	EER96888	AT5G65410.1	16428600
AT5G65410.1	EES15144	AT5G65410.1	16428600

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d031840_P001	Maize	nucleus	86.82	87.66
Os08t0479400-01	Rice	nucleus	75.56	81.03
EER96888	Sorghum	nucleus	67.85	69.87
VIT_18s0001g07140.t01	Wine grape	nucleus	51.13	69.13
GSMUA_Achr7P19060_001	Banana	nucleus	45.34	68.45
GSMUA_Achr6P02170_001	Banana	nucleus	47.27	63.64
Solyc04g074990.2.1	Tomato	nucleus	27.65	60.14
VIT_00s0199g00250.t01	Wine grape	nucleus	46.62	59.43
PGSC0003DMT400084919	Potato	nucleus	32.48	57.71
Solyc05g051420.1.1	Tomato	nucleus	30.87	57.48
KRH74513	Soybean	nucleus	46.62	57.09
KRH45571	Soybean	cytosol, nucleus	35.05	55.9
PGSC0003DMT400096005	Potato	cytosol, mitochondrion, nucleus	25.72	54.42
KRG99446	Soybean	nucleus	43.73	54.4
PGSC0003DMT400033624	Potato	nucleus	41.8	54.17
KRH45572	Soybean	nucleus	34.41	54.04
KRH45573	Soybean	nucleus	34.41	54.04
Solyc04g014260.1.1	Tomato	nucleus	39.55	49.8
PGSC0003DMT400060623	Potato	nucleus	38.91	49.79
KRH69650	Soybean	nucleus	45.66	48.14
KRG90215	Soybean	cytosol	32.8	48.11
KRG90132	Soybean	cytosol	31.19	47.32
KRH45574	Soybean	cytosol	38.26	45.59
CDY54719	Canola	nucleus	33.76	43.57
EES16563	Sorghum	cytosol	12.86	43.48
Bra037816.1-P	Field mustard	nucleus	33.44	42.98
CDX81284	Canola	nucleus	34.73	42.35
KRH71954	Soybean	nucleus	33.44	42.11
KRH71953	Soybean	nucleus	34.41	41.8
KRG90210	Soybean	nucleus	34.41	41.8
CDY33960	Canola	nucleus	36.01	41.64
KRG90213	Soybean	nucleus	34.08	41.57
Bra031859.1-P	Field mustard	nucleus	36.33	41.54
CDY37827	Canola	nucleus	36.33	41.54
AT5G65410.1	Thale cress	nucleus	36.98	41.22
KRG90211	Soybean	cytosol	33.76	40.86
CDY14559	Canola	nucleus	37.62	39.93
Bra024382.1-P	Field mustard	nucleus	37.3	39.59
EES07913	Sorghum	cytosol	12.22	38.78
KXG25227	Sorghum	mitochondrion	15.43	37.8
KXG23238	Sorghum	nucleus	38.26	36.28
KXG35630	Sorghum	nucleus	10.93	30.91
KXG28111	Sorghum	nucleus	38.91	30.71
EER93559	Sorghum	cytosol, mitochondrion, nucleus	22.83	30.34
OQU86730	Sorghum	nucleus	24.44	28.68
OQU78488	Sorghum	plastid	29.26	24.4
KXG30914	Sorghum	nucleus	31.19	23.89
EES15050	Sorghum	cytosol	28.62	22.82
KXG35632	Sorghum	nucleus	27.65	22.57

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.13	EntrezGene:8083565	UniProt:C5YMP0	EnsemblPlants:EES15144	ProteinID:EES15144
ProteinID:EES15144.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	InterPro:Homeobox-like_sf
InterPro:Homeodomain_ZF_HD	InterPro:IPR006456	PFAM:PD125774	PFAM:PF04770	PFscan:PS51523	PANTHER:PTHR31948
PANTHER:PTHR31948:SF25	EnsemblPlantsGene:SORBI_3007G160400	SUPFAM:SSF46689	TIGRFAMs:TIGR01565	TIGRFAMs:TIGR01566	UniParc:UPI0001A87CF7
RefSeq:XP_002445649.1	InterPro:ZF_HD_homeobox_Cys/His_dimer	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr7:-:59510515..59514391

Molecular Weight (calculated)

31800.4 Da

IEP (calculated)

7.300

GRAVY (calculated)

-0.430

Length

311 amino acids

Sequence
(BLAST)

001: MDFDEHDDGD EEMTPMPVSS SYDAPMQPAG LVAGLGGGGG GGTPKPGDSG GGSFRTPGGV VVGGGVGGGA GGGGTRYREC LKNHAVGIGG HAVDGCGEFM
101: AAGEDGSIDA LRCAACGCHR NFHRKESDSP TGGGGADPAA AAALSPAAIT AYGAAAAHHH HHQFSPYYRT PAGYLLHQHQ QLAAAAAGHM QMQRPLALPS
201: TSHSGRVDEG DDMSGLIGPL VVAPMVGMSL GGSGGGGPSG SGGSGSGKKR FRTKFTQEQK DRMLAFAERL GWRIQKHDEA AVQQFCEEVC VKRHVLKVWM
301: HNNKHTLGKK P

Best Arabidopsis Sequence Match ( AT1G14440.1 )
(BLAST)

001: MEIASQEDHD MPIPLNTTFG GGGSHGHMIH HHDHHAANSA PPTHNNNNTT QPPPMPLHGN GHGNNYDHHH HQDPHHVGYN AIIKKPMIKY KECLKNHAAA
101: MGGNATDGCG EFMPSGEDGS IEALTCSACN CHRNFHRKEV EGELAATAMS PYHQHPPHRK LMLNHQKIRS AMPHQMIMPI GVSNYRYMHN NSESEDFMEE
201: DGVTTASRSL PNLPYNQKKR FRTKFTPEQK EKMLSFAEKV GWKIQRQEDC VVQRFCEEIG VKRRVLKVWM HNNKIHFSKK NNINLEDNDN EKINNLNNVD
301: LSGNNDMTKI VP

Arabidopsis Description

ZHD4Zinc-finger homeodomain protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9M9S0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.