Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
CDY54719 | Canola | nucleus | 96.69 | 97.1 |
CDX81284 | Canola | nucleus | 93.39 | 88.63 |
Bra031859.1-P | Field mustard | nucleus | 84.71 | 75.37 |
AT5G65410.1 | Thale cress | nucleus | 83.47 | 72.4 |
Bra024382.1-P | Field mustard | nucleus | 87.6 | 72.35 |
Bra031051.1-P | Field mustard | mitochondrion | 18.59 | 51.14 |
Bra025688.1-P | Field mustard | mitochondrion | 17.77 | 48.86 |
Solyc05g051420.1.1 | Tomato | nucleus | 32.23 | 46.71 |
Bra016538.1-P | Field mustard | mitochondrion | 16.94 | 46.59 |
Bra003791.1-P | Field mustard | mitochondrion | 18.59 | 46.39 |
PGSC0003DMT400084919 | Potato | nucleus | 33.47 | 46.29 |
GSMUA_Achr7P19060_001 | Banana | nucleus | 39.26 | 46.12 |
Bra013822.1-P | Field mustard | nucleus | 42.56 | 45.78 |
Bra015898.1-P | Field mustard | mitochondrion | 17.77 | 45.74 |
PGSC0003DMT400096005 | Potato | cytosol, mitochondrion, nucleus | 27.27 | 44.9 |
Bra010485.1-P | Field mustard | nucleus | 38.84 | 44.76 |
GSMUA_Achr3P20390_001 | Banana | nucleus | 38.02 | 44.44 |
GSMUA_Achr6P02170_001 | Banana | nucleus | 41.32 | 43.29 |
VIT_00s0199g00250.t01 | Wine grape | nucleus | 43.39 | 43.03 |
GSMUA_Achr10P... | Banana | nucleus | 40.08 | 42.36 |
GSMUA_Achr5P05500_001 | Banana | nucleus | 41.32 | 42.02 |
KRH74513 | Soybean | nucleus | 42.56 | 40.55 |
Bra039039.1-P | Field mustard | mitochondrion | 16.12 | 39.8 |
Bra006657.1-P | Field mustard | nucleus | 29.75 | 39.56 |
Bra025362.1-P | Field mustard | mitochondrion | 16.12 | 39.0 |
PGSC0003DMT400060623 | Potato | nucleus | 37.6 | 37.45 |
Zm00001d020774_P001 | Maize | nucleus | 42.15 | 37.36 |
Os09t0466400-01 | Rice | nucleus | 42.56 | 36.92 |
Solyc04g014260.1.1 | Tomato | nucleus | 37.6 | 36.84 |
GSMUA_AchrUn_... | Banana | nucleus | 38.02 | 36.8 |
Bra036852.1-P | Field mustard | nucleus | 32.64 | 36.07 |
Zm00001d005931_P001 | Maize | nucleus | 41.74 | 35.31 |
Os08t0479400-01 | Rice | nucleus | 42.15 | 35.17 |
KRH69650 | Soybean | nucleus | 42.56 | 34.92 |
EER96888 | Sorghum | nucleus | 42.98 | 34.44 |
Bra004399.1-P | Field mustard | nucleus | 32.64 | 34.2 |
Zm00001d031840_P001 | Maize | nucleus | 42.98 | 33.77 |
EES15144 | Sorghum | nucleus | 42.98 | 33.44 |
Bra007869.1-P | Field mustard | nucleus | 31.41 | 33.04 |
TraesCS5D01G253100.1 | Wheat | nucleus | 40.08 | 32.77 |
TraesCS5B01G243800.1 | Wheat | nucleus | 40.08 | 32.66 |
HORVU5Hr1G069730.1 | Barley | nucleus | 40.5 | 32.45 |
TraesCS5A01G246500.1 | Wheat | nucleus | 39.26 | 31.99 |
Bra008712.1-P | Field mustard | cytosol | 32.64 | 30.04 |
Bra003759.1-P | Field mustard | nucleus | 36.36 | 29.93 |
Bra008185.1-P | Field mustard | nucleus | 36.36 | 29.93 |
Bra026589.1-P | Field mustard | nucleus | 36.78 | 29.67 |
Bra015857.1-P | Field mustard | nucleus | 36.78 | 29.47 |
Bra026219.1-P | Field mustard | nucleus | 37.19 | 29.03 |
Bra026830.1-P | Field mustard | nucleus | 37.19 | 28.66 |
Bra037224.1-P | Field mustard | nucleus | 30.99 | 28.3 |
Bra039038.1-P | Field mustard | nucleus | 35.95 | 28.16 |
Bra012882.1-P | Field mustard | nucleus | 30.58 | 27.92 |
Bra025644.1-P | Field mustard | nucleus | 34.3 | 26.18 |
Bra025363.1-P | Field mustard | nucleus | 35.95 | 25.29 |
Bra027455.1-P | Field mustard | nucleus | 25.62 | 21.6 |
Bra039615.1-P | Field mustard | cytosol | 14.88 | 19.89 |
Protein Annotations
Gene3D:1.10.10.60 | MapMan:15.5.3.13 | EnsemblPlantsGene:Bra037816 | EnsemblPlants:Bra037816.1 | EnsemblPlants:Bra037816.1-P | GO:GO:0003674 |
GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:Homeodomain_ZF_HD | InterPro:IPR006456 |
UniProt:M4F9Q3 | PFAM:PD125774 | PFAM:PF04770 | PFscan:PS51523 | PANTHER:PTHR31948 | PANTHER:PTHR31948:SF5 |
SUPFAM:SSF46689 | TIGRFAMs:TIGR01565 | TIGRFAMs:TIGR01566 | UniParc:UPI0002541B43 | InterPro:ZF_HD_homeobox_Cys/His_dimer | SEG:seg |
Description
AT5G65410 (E=7e-095) ATHB25, ZFHD2, HB25 | HB25 (HOMEOBOX PROTEIN 25); DNA binding / sequence-specific DNA binding / transcription factor/ transcription regulator
Coordinates
chrA09:+:3722446..3723174
Molecular Weight (calculated)
26739.7 Da
IEP (calculated)
8.305
GRAVY (calculated)
-0.708
Length
242 amino acids
Sequence
(BLAST)
(BLAST)
001: MNLQEEEEDN AVYDSPPLPP SSCVLKASTE SPDTAGTNLT GGGGFMVVHG GSRFRFRECL KNQAVNIGGH AVDGCREFMP AGTEGTIDAL KCAACGCHRN
101: FHRKELPYFH HLAPPPPPRG SYRVPAPVSY RPSPPQASPV QLALPPPAED RMETSSAEAG GIRKRFRTKF TAEQKERMLG LAERIGWRIQ RQDDEVIQRF
201: CQETGVPRQV LKVWLHNNKH TRGMSSSSPL DQHQNHTLPP PS
101: FHRKELPYFH HLAPPPPPRG SYRVPAPVSY RPSPPQASPV QLALPPPAED RMETSSAEAG GIRKRFRTKF TAEQKERMLG LAERIGWRIQ RQDDEVIQRF
201: CQETGVPRQV LKVWLHNNKH TRGMSSSSPL DQHQNHTLPP PS
001: MEFEDNNNNN DEEQEEDMNL HEEEEDDDAV YDSPPLSRVL PKASTESHET TGTTSTGGGG GFMVVHGGGG SRFRFRECLK NQAVNIGGHA VDGCGEFMPA
101: GIEGTIDALK CAACGCHRNF HRKELPYFHH APPQHQPPPP PPGFYRLPAP VSYRPPPSQA PPLQLALPPP QRERSEDPME TSSAEAGGGI RKRHRTKFTA
201: EQKERMLALA ERIGWRIQRQ DDEVIQRFCQ ETGVPRQVLK VWLHNNKHTL GKSPSPLHHH QAPPPPPPQS SFHHEQDQP
101: GIEGTIDALK CAACGCHRNF HRKELPYFHH APPQHQPPPP PPGFYRLPAP VSYRPPPSQA PPLQLALPPP QRERSEDPME TSSAEAGGGI RKRHRTKFTA
201: EQKERMLALA ERIGWRIQRQ DDEVIQRFCQ ETGVPRQVLK VWLHNNKHTL GKSPSPLHHH QAPPPPPPQS SFHHEQDQP
Arabidopsis Description
ZHD1Zinc-finger homeodomain protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKP8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.