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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 5
  • mitochondrion 1
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY54719 Canola nucleus 96.69 97.1
CDX81284 Canola nucleus 93.39 88.63
Bra031859.1-P Field mustard nucleus 84.71 75.37
AT5G65410.1 Thale cress nucleus 83.47 72.4
Bra024382.1-P Field mustard nucleus 87.6 72.35
Bra031051.1-P Field mustard mitochondrion 18.59 51.14
Bra025688.1-P Field mustard mitochondrion 17.77 48.86
Solyc05g051420.1.1 Tomato nucleus 32.23 46.71
Bra016538.1-P Field mustard mitochondrion 16.94 46.59
Bra003791.1-P Field mustard mitochondrion 18.59 46.39
PGSC0003DMT400084919 Potato nucleus 33.47 46.29
GSMUA_Achr7P19060_001 Banana nucleus 39.26 46.12
Bra013822.1-P Field mustard nucleus 42.56 45.78
Bra015898.1-P Field mustard mitochondrion 17.77 45.74
PGSC0003DMT400096005 Potato cytosol, mitochondrion, nucleus 27.27 44.9
Bra010485.1-P Field mustard nucleus 38.84 44.76
GSMUA_Achr3P20390_001 Banana nucleus 38.02 44.44
GSMUA_Achr6P02170_001 Banana nucleus 41.32 43.29
VIT_00s0199g00250.t01 Wine grape nucleus 43.39 43.03
GSMUA_Achr10P... Banana nucleus 40.08 42.36
GSMUA_Achr5P05500_001 Banana nucleus 41.32 42.02
KRH74513 Soybean nucleus 42.56 40.55
Bra039039.1-P Field mustard mitochondrion 16.12 39.8
Bra006657.1-P Field mustard nucleus 29.75 39.56
Bra025362.1-P Field mustard mitochondrion 16.12 39.0
PGSC0003DMT400060623 Potato nucleus 37.6 37.45
Zm00001d020774_P001 Maize nucleus 42.15 37.36
Os09t0466400-01 Rice nucleus 42.56 36.92
Solyc04g014260.1.1 Tomato nucleus 37.6 36.84
GSMUA_AchrUn_... Banana nucleus 38.02 36.8
Bra036852.1-P Field mustard nucleus 32.64 36.07
Zm00001d005931_P001 Maize nucleus 41.74 35.31
Os08t0479400-01 Rice nucleus 42.15 35.17
KRH69650 Soybean nucleus 42.56 34.92
EER96888 Sorghum nucleus 42.98 34.44
Bra004399.1-P Field mustard nucleus 32.64 34.2
Zm00001d031840_P001 Maize nucleus 42.98 33.77
EES15144 Sorghum nucleus 42.98 33.44
Bra007869.1-P Field mustard nucleus 31.41 33.04
TraesCS5D01G253100.1 Wheat nucleus 40.08 32.77
TraesCS5B01G243800.1 Wheat nucleus 40.08 32.66
HORVU5Hr1G069730.1 Barley nucleus 40.5 32.45
TraesCS5A01G246500.1 Wheat nucleus 39.26 31.99
Bra008712.1-P Field mustard cytosol 32.64 30.04
Bra003759.1-P Field mustard nucleus 36.36 29.93
Bra008185.1-P Field mustard nucleus 36.36 29.93
Bra026589.1-P Field mustard nucleus 36.78 29.67
Bra015857.1-P Field mustard nucleus 36.78 29.47
Bra026219.1-P Field mustard nucleus 37.19 29.03
Bra026830.1-P Field mustard nucleus 37.19 28.66
Bra037224.1-P Field mustard nucleus 30.99 28.3
Bra039038.1-P Field mustard nucleus 35.95 28.16
Bra012882.1-P Field mustard nucleus 30.58 27.92
Bra025644.1-P Field mustard nucleus 34.3 26.18
Bra025363.1-P Field mustard nucleus 35.95 25.29
Bra027455.1-P Field mustard nucleus 25.62 21.6
Bra039615.1-P Field mustard cytosol 14.88 19.89
Protein Annotations
Gene3D:1.10.10.60MapMan:15.5.3.13EnsemblPlantsGene:Bra037816EnsemblPlants:Bra037816.1EnsemblPlants:Bra037816.1-PGO:GO:0003674
GO:GO:0003676GO:GO:0003677GO:GO:0005488InterPro:Homeobox-like_sfInterPro:Homeodomain_ZF_HDInterPro:IPR006456
UniProt:M4F9Q3PFAM:PD125774PFAM:PF04770PFscan:PS51523PANTHER:PTHR31948PANTHER:PTHR31948:SF5
SUPFAM:SSF46689TIGRFAMs:TIGR01565TIGRFAMs:TIGR01566UniParc:UPI0002541B43InterPro:ZF_HD_homeobox_Cys/His_dimerSEG:seg
Description
AT5G65410 (E=7e-095) ATHB25, ZFHD2, HB25 | HB25 (HOMEOBOX PROTEIN 25); DNA binding / sequence-specific DNA binding / transcription factor/ transcription regulator
Coordinates
chrA09:+:3722446..3723174
Molecular Weight (calculated)
26739.7 Da
IEP (calculated)
8.305
GRAVY (calculated)
-0.708
Length
242 amino acids
Sequence
(BLAST)
001: MNLQEEEEDN AVYDSPPLPP SSCVLKASTE SPDTAGTNLT GGGGFMVVHG GSRFRFRECL KNQAVNIGGH AVDGCREFMP AGTEGTIDAL KCAACGCHRN
101: FHRKELPYFH HLAPPPPPRG SYRVPAPVSY RPSPPQASPV QLALPPPAED RMETSSAEAG GIRKRFRTKF TAEQKERMLG LAERIGWRIQ RQDDEVIQRF
201: CQETGVPRQV LKVWLHNNKH TRGMSSSSPL DQHQNHTLPP PS
Best Arabidopsis Sequence Match ( AT5G65410.1 )
(BLAST)
001: MEFEDNNNNN DEEQEEDMNL HEEEEDDDAV YDSPPLSRVL PKASTESHET TGTTSTGGGG GFMVVHGGGG SRFRFRECLK NQAVNIGGHA VDGCGEFMPA
101: GIEGTIDALK CAACGCHRNF HRKELPYFHH APPQHQPPPP PPGFYRLPAP VSYRPPPSQA PPLQLALPPP QRERSEDPME TSSAEAGGGI RKRHRTKFTA
201: EQKERMLALA ERIGWRIQRQ DDEVIQRFCQ ETGVPRQVLK VWLHNNKHTL GKSPSPLHHH QAPPPPPPQS SFHHEQDQP
Arabidopsis Description
ZHD1Zinc-finger homeodomain protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKP8]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.